Strain Fitness in Shewanella loihica PV-4 around Shew_2957

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2955 and Shew_2956 are separated by 271 nucleotidesShew_2956 and Shew_2957 overlap by 1 nucleotidesShew_2957 and Shew_2958 overlap by 4 nucleotides Shew_2955: Shew_2955 - ornithine cyclodeaminase (RefSeq), at 3,503,518 to 3,504,462 _2955 Shew_2956: Shew_2956 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 3,504,734 to 3,505,306 _2956 Shew_2957: Shew_2957 - hypothetical protein (RefSeq), at 3,505,306 to 3,505,818 _2957 Shew_2958: Shew_2958 - hypothetical protein (RefSeq), at 3,505,815 to 3,506,762 _2958 Position (kb) 3505 3506Strain fitness (log2 ratio) -2 -1 0 1at 3504.493 kb on + strandat 3504.550 kb on - strandat 3505.053 kb on + strand, within Shew_2956at 3505.182 kb on + strand, within Shew_2956at 3505.270 kb on - strandat 3505.583 kb on + strand, within Shew_2957at 3505.646 kb on + strand, within Shew_2957at 3506.406 kb on + strand, within Shew_2958

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,504,493 + +0.7
3,504,550 - +0.1
3,505,053 + Shew_2956 0.56 -0.4
3,505,182 + Shew_2956 0.78 +0.1
3,505,270 - -0.1
3,505,583 + Shew_2957 0.54 +0.8
3,505,646 + Shew_2957 0.66 +0.7
3,506,406 + Shew_2958 0.62 -2.6

Or see this region's nucleotide sequence