Strain Fitness in Shewanella loihica PV-4 around Shew_2900

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2899 and Shew_2900 overlap by 14 nucleotidesShew_2900 and Shew_2901 are separated by 234 nucleotides Shew_2899: Shew_2899 - glutathione synthetase (RefSeq), at 3,436,987 to 3,438,021 _2899 Shew_2900: Shew_2900 - hypothetical protein (RefSeq), at 3,438,008 to 3,439,999 _2900 Shew_2901: Shew_2901 - phosphoesterase, PA-phosphatase related (RefSeq), at 3,440,234 to 3,440,908 _2901 Position (kb) 3438 3439 3440Strain fitness (log2 ratio) -1 0 1at 3437.086 kb on - strandat 3437.696 kb on + strand, within Shew_2899at 3437.789 kb on + strand, within Shew_2899at 3437.879 kb on + strand, within Shew_2899at 3437.976 kb on + strandat 3438.151 kb on - strandat 3438.609 kb on - strand, within Shew_2900at 3438.690 kb on + strand, within Shew_2900at 3439.075 kb on + strand, within Shew_2900at 3439.596 kb on - strand, within Shew_2900at 3439.948 kb on + strandat 3440.516 kb on + strand, within Shew_2901at 3440.708 kb on + strand, within Shew_2901

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,437,086 - -0.3
3,437,696 + Shew_2899 0.69 +0.4
3,437,789 + Shew_2899 0.77 +0.1
3,437,879 + Shew_2899 0.86 -1.0
3,437,976 + +0.1
3,438,151 - +0.5
3,438,609 - Shew_2900 0.30 +1.2
3,438,690 + Shew_2900 0.34 +0.4
3,439,075 + Shew_2900 0.54 +1.1
3,439,596 - Shew_2900 0.80 +0.6
3,439,948 + +0.1
3,440,516 + Shew_2901 0.42 +0.3
3,440,708 + Shew_2901 0.70 +0.2

Or see this region's nucleotide sequence