Strain Fitness in Shewanella loihica PV-4 around Shew_2764

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2762 and Shew_2763 overlap by 8 nucleotidesShew_2763 and Shew_2764 are separated by 60 nucleotidesShew_2764 and Shew_2765 are separated by 182 nucleotidesShew_2765 and Shew_2766 are separated by 371 nucleotides Shew_2762: Shew_2762 - hypothetical protein (RefSeq), at 3,267,937 to 3,268,326 _2762 Shew_2763: Shew_2763 - dienelactone hydrolase (RefSeq), at 3,268,319 to 3,269,041 _2763 Shew_2764: Shew_2764 - DNA-binding transcriptional activator GcvA (RefSeq), at 3,269,102 to 3,270,013 _2764 Shew_2765: Shew_2765 - hypothetical protein (RefSeq), at 3,270,196 to 3,270,426 _2765 Shew_2766: Shew_2766 - thiamine biosynthesis protein ThiI (RefSeq), at 3,270,798 to 3,272,255 _2766 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -1 0 1 2at 3268.332 kb on - strandat 3268.392 kb on - strand, within Shew_2763at 3268.671 kb on + strand, within Shew_2763at 3268.938 kb on + strand, within Shew_2763at 3269.551 kb on + strand, within Shew_2764at 3269.551 kb on + strand, within Shew_2764at 3270.528 kb on + strandat 3270.528 kb on + strandat 3270.528 kb on + strandat 3270.536 kb on - strandat 3270.987 kb on + strand, within Shew_2766

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,268,332 - +0.4
3,268,392 - Shew_2763 0.10 -0.3
3,268,671 + Shew_2763 0.49 +0.6
3,268,938 + Shew_2763 0.86 +0.2
3,269,551 + Shew_2764 0.49 +2.7
3,269,551 + Shew_2764 0.49 -0.5
3,270,528 + -0.9
3,270,528 + +1.0
3,270,528 + +0.5
3,270,536 - +1.8
3,270,987 + Shew_2766 0.13 +0.8

Or see this region's nucleotide sequence