Strain Fitness in Shewanella loihica PV-4 around Shew_2607

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2605 and Shew_2606 are separated by 9 nucleotidesShew_2606 and Shew_2607 are separated by 63 nucleotidesShew_2607 and Shew_2608 are separated by 123 nucleotides Shew_2605: Shew_2605 - putative phenylacetate-coenzyme A ligase (RefSeq), at 3,070,906 to 3,072,132 _2605 Shew_2606: Shew_2606 - ABC transporter-related protein (RefSeq), at 3,072,142 to 3,072,960 _2606 Shew_2607: Shew_2607 - putative branched-chain amino acid ABC transporter (RefSeq), at 3,073,024 to 3,074,268 _2607 Shew_2608: Shew_2608 - inner-membrane translocator (RefSeq), at 3,074,392 to 3,075,465 _2608 Position (kb) 3073 3074 3075Strain fitness (log2 ratio) -2 -1 0 1 2at 3072.152 kb on + strandat 3072.353 kb on + strand, within Shew_2606at 3072.353 kb on + strand, within Shew_2606at 3072.361 kb on - strand, within Shew_2606at 3072.361 kb on - strand, within Shew_2606at 3072.361 kb on - strand, within Shew_2606at 3073.006 kb on - strandat 3073.125 kb on + strandat 3073.733 kb on + strand, within Shew_2607at 3073.754 kb on + strand, within Shew_2607at 3073.853 kb on - strand, within Shew_2607at 3074.176 kb on - strandat 3074.243 kb on + strandat 3074.383 kb on + strandat 3074.413 kb on - strandat 3074.413 kb on - strandat 3074.423 kb on + strandat 3074.518 kb on - strand, within Shew_2608at 3074.545 kb on + strand, within Shew_2608at 3074.718 kb on - strand, within Shew_2608at 3075.007 kb on - strand, within Shew_2608

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,072,152 + -0.1
3,072,353 + Shew_2606 0.26 -1.2
3,072,353 + Shew_2606 0.26 -1.5
3,072,361 - Shew_2606 0.27 +1.0
3,072,361 - Shew_2606 0.27 -0.2
3,072,361 - Shew_2606 0.27 -2.1
3,073,006 - +0.1
3,073,125 + -1.3
3,073,733 + Shew_2607 0.57 +0.8
3,073,754 + Shew_2607 0.59 +1.3
3,073,853 - Shew_2607 0.67 +0.4
3,074,176 - +0.1
3,074,243 + +0.2
3,074,383 + +0.2
3,074,413 - -0.1
3,074,413 - +0.2
3,074,423 + -1.2
3,074,518 - Shew_2608 0.12 -0.1
3,074,545 + Shew_2608 0.14 +2.1
3,074,718 - Shew_2608 0.30 +0.5
3,075,007 - Shew_2608 0.57 -0.1

Or see this region's nucleotide sequence