Strain Fitness in Shewanella loihica PV-4 around Shew_2598
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,064,147 | - | Shew_2597 | 0.19 | +0.2 | |
3,064,239 | + | Shew_2597 | 0.32 | -2.1 | |
3,064,239 | + | Shew_2597 | 0.32 | +0.2 | |
3,064,239 | + | Shew_2597 | 0.32 | +0.6 | |
3,064,246 | + | Shew_2597 | 0.33 | +1.5 | |
3,064,247 | - | Shew_2597 | 0.33 | -1.5 | |
3,064,254 | - | Shew_2597 | 0.34 | +0.4 | |
3,064,377 | + | Shew_2597 | 0.51 | +1.1 | |
3,064,615 | - | Shew_2597 | 0.85 | +0.0 | |
3,064,687 | - | -0.2 | |||
3,064,865 | - | -1.1 | |||
3,064,988 | - | -0.0 | |||
3,065,026 | + | -0.3 | |||
3,065,032 | + | -0.8 | |||
3,065,034 | - | +0.2 | |||
3,065,034 | - | +0.0 | |||
3,065,045 | + | -0.5 | |||
3,065,053 | - | -0.2 | |||
3,065,058 | - | +0.6 | |||
3,065,058 | - | -2.1 | |||
3,065,131 | + | Shew_2598 | 0.14 | +1.6 | |
3,065,344 | + | Shew_2598 | 0.67 | +0.1 | |
3,065,362 | - | Shew_2598 | 0.71 | +0.7 | |
3,065,479 | + | +0.3 | |||
3,065,634 | + | -1.7 | |||
3,065,654 | + | +0.9 | |||
3,065,670 | - | +0.2 | |||
3,066,189 | - | -0.0 | |||
3,066,335 | + | +0.2 | |||
3,066,429 | + | -0.0 |
Or see this region's nucleotide sequence