Strain Fitness in Shewanella loihica PV-4 around Shew_2598

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2597 and Shew_2598 are separated by 346 nucleotidesShew_2598 and Shew_2599 are separated by 179 nucleotidesShew_2599 and Shew_2600 are separated by 477 nucleotides Shew_2597: Shew_2597 - hypothetical protein (RefSeq), at 3,064,009 to 3,064,725 _2597 Shew_2598: Shew_2598 - hypothetical protein (RefSeq), at 3,065,072 to 3,065,479 _2598 Shew_2599: Shew_2599 - HxlR family transcriptional regulator (RefSeq), at 3,065,659 to 3,065,994 _2599 Shew_2600: Shew_2600 - hypothetical protein (RefSeq), at 3,066,472 to 3,066,813 _2600 Position (kb) 3065 3066Strain fitness (log2 ratio) -2 -1 0 1at 3064.147 kb on - strand, within Shew_2597at 3064.239 kb on + strand, within Shew_2597at 3064.239 kb on + strand, within Shew_2597at 3064.239 kb on + strand, within Shew_2597at 3064.246 kb on + strand, within Shew_2597at 3064.247 kb on - strand, within Shew_2597at 3064.254 kb on - strand, within Shew_2597at 3064.377 kb on + strand, within Shew_2597at 3064.615 kb on - strand, within Shew_2597at 3064.687 kb on - strandat 3064.865 kb on - strandat 3064.988 kb on - strandat 3065.026 kb on + strandat 3065.032 kb on + strandat 3065.034 kb on - strandat 3065.034 kb on - strandat 3065.045 kb on + strandat 3065.053 kb on - strandat 3065.058 kb on - strandat 3065.058 kb on - strandat 3065.131 kb on + strand, within Shew_2598at 3065.344 kb on + strand, within Shew_2598at 3065.362 kb on - strand, within Shew_2598at 3065.479 kb on + strandat 3065.634 kb on + strandat 3065.654 kb on + strandat 3065.670 kb on - strandat 3066.189 kb on - strandat 3066.335 kb on + strandat 3066.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,064,147 - Shew_2597 0.19 +0.2
3,064,239 + Shew_2597 0.32 -2.1
3,064,239 + Shew_2597 0.32 +0.2
3,064,239 + Shew_2597 0.32 +0.6
3,064,246 + Shew_2597 0.33 +1.5
3,064,247 - Shew_2597 0.33 -1.5
3,064,254 - Shew_2597 0.34 +0.4
3,064,377 + Shew_2597 0.51 +1.1
3,064,615 - Shew_2597 0.85 +0.0
3,064,687 - -0.2
3,064,865 - -1.1
3,064,988 - -0.0
3,065,026 + -0.3
3,065,032 + -0.8
3,065,034 - +0.2
3,065,034 - +0.0
3,065,045 + -0.5
3,065,053 - -0.2
3,065,058 - +0.6
3,065,058 - -2.1
3,065,131 + Shew_2598 0.14 +1.6
3,065,344 + Shew_2598 0.67 +0.1
3,065,362 - Shew_2598 0.71 +0.7
3,065,479 + +0.3
3,065,634 + -1.7
3,065,654 + +0.9
3,065,670 - +0.2
3,066,189 - -0.0
3,066,335 + +0.2
3,066,429 + -0.0

Or see this region's nucleotide sequence