Strain Fitness in Shewanella loihica PV-4 around Shew_2210

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2209 and Shew_2210 are separated by 81 nucleotidesShew_2210 and Shew_2211 are separated by 275 nucleotides Shew_2209: Shew_2209 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,572,977 to 2,576,453 _2209 Shew_2210: Shew_2210 - proprotein convertase, P (RefSeq), at 2,576,535 to 2,577,746 _2210 Shew_2211: Shew_2211 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 2,578,022 to 2,579,128 _2211 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -1 0 1at 2576.196 kb on - strandat 2576.246 kb on + strandat 2576.313 kb on - strandat 2576.691 kb on + strand, within Shew_2210at 2576.699 kb on - strand, within Shew_2210at 2577.203 kb on + strand, within Shew_2210at 2578.217 kb on + strand, within Shew_2211

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,576,196 - +0.8
2,576,246 + +0.1
2,576,313 - -0.3
2,576,691 + Shew_2210 0.13 -0.9
2,576,699 - Shew_2210 0.14 +0.3
2,577,203 + Shew_2210 0.55 -1.6
2,578,217 + Shew_2211 0.18 -1.4

Or see this region's nucleotide sequence