Strain Fitness in Shewanella loihica PV-4 around Shew_2153

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2151 and Shew_2152 are separated by 354 nucleotidesShew_2152 and Shew_2153 are separated by 105 nucleotidesShew_2153 and Shew_2154 are separated by 154 nucleotides Shew_2151: Shew_2151 - hypothetical protein (RefSeq), at 2,496,410 to 2,496,787 _2151 Shew_2152: Shew_2152 - hypothetical protein (RefSeq), at 2,497,142 to 2,497,486 _2152 Shew_2153: Shew_2153 - LysR family transcriptional regulator (RefSeq), at 2,497,592 to 2,498,497 _2153 Shew_2154: Shew_2154 - homogentisate 1,2-dioxygenase (RefSeq), at 2,498,652 to 2,499,812 _2154 Position (kb) 2497 2498 2499Strain fitness (log2 ratio) -1 0 1 2at 2497.673 kb on - strandat 2497.973 kb on - strand, within Shew_2153at 2498.952 kb on + strand, within Shew_2154at 2498.960 kb on - strand, within Shew_2154at 2498.960 kb on - strand, within Shew_2154at 2498.960 kb on - strand, within Shew_2154

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,497,673 - -1.7
2,497,973 - Shew_2153 0.42 +1.2
2,498,952 + Shew_2154 0.26 +2.7
2,498,960 - Shew_2154 0.27 +0.6
2,498,960 - Shew_2154 0.27 -0.0
2,498,960 - Shew_2154 0.27 +1.5

Or see this region's nucleotide sequence