Strain Fitness in Shewanella loihica PV-4 around Shew_2061

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2060 and Shew_2061 are separated by 141 nucleotidesShew_2061 and Shew_2062 are separated by 184 nucleotidesShew_2062 and Shew_2063 overlap by 7 nucleotides Shew_2060: Shew_2060 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit (RefSeq), at 2,379,396 to 2,380,457 _2060 Shew_2061: Shew_2061 - radical SAM domain-containing protein (RefSeq), at 2,380,599 to 2,381,267 _2061 Shew_2062: Shew_2062 - exsB protein (RefSeq), at 2,381,452 to 2,382,135 _2062 Shew_2063: Shew_2063 - rhomboid family protein (RefSeq), at 2,382,129 to 2,382,713 _2063 Position (kb) 2380 2381 2382Strain fitness (log2 ratio) -2 -1 0 1 2at 2379.908 kb on + strand, within Shew_2060at 2381.019 kb on + strand, within Shew_2061at 2381.118 kb on + strand, within Shew_2061at 2381.331 kb on - strandat 2381.663 kb on + strand, within Shew_2062at 2381.730 kb on + strand, within Shew_2062at 2381.978 kb on + strand, within Shew_2062at 2382.216 kb on - strand, within Shew_2063

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,379,908 + Shew_2060 0.48 -2.3
2,381,019 + Shew_2061 0.63 +0.9
2,381,118 + Shew_2061 0.78 +1.9
2,381,331 - +1.1
2,381,663 + Shew_2062 0.31 -1.8
2,381,730 + Shew_2062 0.41 -1.7
2,381,978 + Shew_2062 0.77 -1.3
2,382,216 - Shew_2063 0.15 -0.7

Or see this region's nucleotide sequence