Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1928 and Shew_1929 are separated by 314 nucleotides Shew_1929 and Shew_R0064 are separated by 135 nucleotides Shew_R0064 and Shew_1930 are separated by 329 nucleotides Shew_1930 and Shew_1931 are separated by 200 nucleotides
Shew_1928: Shew_1928 - quinolinate synthetase (RefSeq), at 2,226,384 to 2,227,451
_1928
Shew_1929: Shew_1929 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,227,766 to 2,229,754
_1929
Shew_R0064: Shew_R0064 - tRNA-Ser (RefSeq), at 2,229,890 to 2,229,977
_R0064
Shew_1930: Shew_1930 - CopG/DNA-binding domain-containing protein (RefSeq), at 2,230,307 to 2,230,504
_1930
Shew_1931: Shew_1931 - alkylphosphonate utilization operon protein PhnA (RefSeq), at 2,230,705 to 2,231,049
_1931
Position (kb)
2227
2228
2229
2230 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2227.440 kb on + strand at 2227.581 kb on - strand at 2228.238 kb on - strand, within Shew_1929 at 2228.605 kb on + strand, within Shew_1929 at 2228.966 kb on - strand, within Shew_1929 at 2229.203 kb on - strand, within Shew_1929 at 2229.495 kb on + strand, within Shew_1929 at 2230.139 kb on - strand at 2230.744 kb on + strand, within Shew_1931
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 2,227,440 + -3.9 2,227,581 - +0.6 2,228,238 - Shew_1929 0.24 +1.6 2,228,605 + Shew_1929 0.42 +0.5 2,228,966 - Shew_1929 0.60 +0.6 2,229,203 - Shew_1929 0.72 +0.2 2,229,495 + Shew_1929 0.87 +0.8 2,230,139 - -0.1 2,230,744 + Shew_1931 0.11 +0.3
Or see this region's nucleotide sequence