Strain Fitness in Shewanella loihica PV-4 around Shew_1929

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1928 and Shew_1929 are separated by 314 nucleotidesShew_1929 and Shew_R0064 are separated by 135 nucleotidesShew_R0064 and Shew_1930 are separated by 329 nucleotidesShew_1930 and Shew_1931 are separated by 200 nucleotides Shew_1928: Shew_1928 - quinolinate synthetase (RefSeq), at 2,226,384 to 2,227,451 _1928 Shew_1929: Shew_1929 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,227,766 to 2,229,754 _1929 Shew_R0064: Shew_R0064 - tRNA-Ser (RefSeq), at 2,229,890 to 2,229,977 _R0064 Shew_1930: Shew_1930 - CopG/DNA-binding domain-containing protein (RefSeq), at 2,230,307 to 2,230,504 _1930 Shew_1931: Shew_1931 - alkylphosphonate utilization operon protein PhnA (RefSeq), at 2,230,705 to 2,231,049 _1931 Position (kb) 2227 2228 2229 2230Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2227.440 kb on + strandat 2227.581 kb on - strandat 2228.238 kb on - strand, within Shew_1929at 2228.605 kb on + strand, within Shew_1929at 2228.966 kb on - strand, within Shew_1929at 2229.203 kb on - strand, within Shew_1929at 2229.495 kb on + strand, within Shew_1929at 2230.139 kb on - strandat 2230.744 kb on + strand, within Shew_1931

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,227,440 + -3.9
2,227,581 - +0.6
2,228,238 - Shew_1929 0.24 +1.6
2,228,605 + Shew_1929 0.42 +0.5
2,228,966 - Shew_1929 0.60 +0.6
2,229,203 - Shew_1929 0.72 +0.2
2,229,495 + Shew_1929 0.87 +0.8
2,230,139 - -0.1
2,230,744 + Shew_1931 0.11 +0.3

Or see this region's nucleotide sequence