Strain Fitness in Shewanella loihica PV-4 around Shew_1781

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1780 and Shew_1781 are separated by 308 nucleotidesShew_1781 and Shew_1782 are separated by 763 nucleotides Shew_1780: Shew_1780 - glutathione S-transferase domain-containing protein (RefSeq), at 2,036,973 to 2,037,656 _1780 Shew_1781: Shew_1781 - hypothetical protein (RefSeq), at 2,037,965 to 2,038,945 _1781 Shew_1782: Shew_1782 - MarR family transcriptional regulator (RefSeq), at 2,039,709 to 2,040,188 _1782 Position (kb) 2037 2038 2039Strain fitness (log2 ratio) -1 0 1 2at 2037.091 kb on - strand, within Shew_1780at 2037.091 kb on - strand, within Shew_1780at 2037.367 kb on - strand, within Shew_1780at 2037.931 kb on + strandat 2038.228 kb on + strand, within Shew_1781at 2038.383 kb on - strand, within Shew_1781at 2038.701 kb on - strand, within Shew_1781at 2038.961 kb on - strandat 2039.114 kb on - strandat 2039.251 kb on - strandat 2039.325 kb on + strandat 2039.849 kb on + strand, within Shew_1782

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,037,091 - Shew_1780 0.17 +0.2
2,037,091 - Shew_1780 0.17 -0.0
2,037,367 - Shew_1780 0.58 +2.2
2,037,931 + +0.6
2,038,228 + Shew_1781 0.27 +1.2
2,038,383 - Shew_1781 0.43 +1.5
2,038,701 - Shew_1781 0.75 -0.1
2,038,961 - +0.0
2,039,114 - +0.8
2,039,251 - +0.9
2,039,325 + -0.8
2,039,849 + Shew_1782 0.29 +1.2

Or see this region's nucleotide sequence