Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1730 and Shew_1731 are separated by 262 nucleotides Shew_1731 and Shew_1732 are separated by 30 nucleotides Shew_1732 and Shew_1733 overlap by 4 nucleotides Shew_1733 and Shew_1734 are separated by 30 nucleotides
Shew_1730: Shew_1730 - hypothetical protein (RefSeq), at 1,982,460 to 1,983,026
_1730
Shew_1731: Shew_1731 - histidine triad (HIT) protein (RefSeq), at 1,983,289 to 1,983,639
_1731
Shew_1732: Shew_1732 - hypothetical protein (RefSeq), at 1,983,670 to 1,984,167
_1732
Shew_1733: Shew_1733 - thioesterase superfamily protein (RefSeq), at 1,984,164 to 1,984,628
_1733
Shew_1734: Shew_1734 - hypothetical protein (RefSeq), at 1,984,659 to 1,985,048
_1734
Position (kb) 1983
1984
1985 Strain fitness (log2 ratio) -1
0
1
2 at 1982.956 kb on - strand, within Shew_1730 at 1983.389 kb on - strand, within Shew_1731 at 1983.660 kb on + strand at 1983.668 kb on - strand at 1983.806 kb on + strand, within Shew_1732 at 1983.991 kb on + strand, within Shew_1732 at 1984.120 kb on - strand at 1984.120 kb on - strand at 1984.449 kb on - strand, within Shew_1733 at 1984.945 kb on + strand, within Shew_1734 at 1984.945 kb on + strand, within Shew_1734
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 1,982,956 - Shew_1730 0.87 -0.9 1,983,389 - Shew_1731 0.28 +1.1 1,983,660 + +1.6 1,983,668 - +0.5 1,983,806 + Shew_1732 0.27 +1.1 1,983,991 + Shew_1732 0.64 +1.4 1,984,120 - +1.9 1,984,120 - -0.2 1,984,449 - Shew_1733 0.61 +1.0 1,984,945 + Shew_1734 0.73 -0.2 1,984,945 + Shew_1734 0.73 +0.5
Or see this region's nucleotide sequence