Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1553 and Shew_1554 are separated by 135 nucleotides Shew_1554 and Shew_1555 are separated by 262 nucleotides Shew_1555 and Shew_1556 are separated by 256 nucleotides Shew_1556 and Shew_1557 are separated by 187 nucleotides
Shew_1553: Shew_1553 - hypothetical protein (RefSeq), at 1,784,052 to 1,784,534
_1553
Shew_1554: Shew_1554 - hypothetical protein (RefSeq), at 1,784,670 to 1,785,014
_1554
Shew_1555: Shew_1555 - Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq), at 1,785,277 to 1,786,308
_1555
Shew_1556: Shew_1556 - hypothetical protein (RefSeq), at 1,786,565 to 1,787,014
_1556
Shew_1557: Shew_1557 - cupin 4 family protein (RefSeq), at 1,787,202 to 1,788,362
_1557
Position (kb)
1785
1786
1787 Strain fitness (log2 ratio)
-2
-1
0
1 at 1784.701 kb on - strand at 1784.870 kb on + strand, within Shew_1554 at 1785.040 kb on - strand at 1785.184 kb on - strand at 1785.801 kb on + strand, within Shew_1555 at 1785.966 kb on - strand, within Shew_1555 at 1787.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 1,784,701 - +0.5 1,784,870 + Shew_1554 0.58 -0.2 1,785,040 - +0.4 1,785,184 - +0.2 1,785,801 + Shew_1555 0.51 -0.6 1,785,966 - Shew_1555 0.67 -2.7 1,787,287 - -1.0
Or see this region's nucleotide sequence