Strain Fitness in Shewanella loihica PV-4 around Shew_1483

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1482 and Shew_1483 overlap by 4 nucleotidesShew_1483 and Shew_1484 are separated by 111 nucleotides Shew_1482: Shew_1482 - amine oxidase (RefSeq), at 1,706,687 to 1,707,940 _1482 Shew_1483: Shew_1483 - hypothetical protein (RefSeq), at 1,707,937 to 1,708,740 _1483 Shew_1484: Shew_1484 - cyclopropane-fatty-acyl-phospholipid synthase (RefSeq), at 1,708,852 to 1,710,132 _1484 Position (kb) 1707 1708 1709Strain fitness (log2 ratio) -1 0 1at 1707.087 kb on + strand, within Shew_1482at 1707.228 kb on + strand, within Shew_1482at 1707.264 kb on + strand, within Shew_1482at 1707.363 kb on - strand, within Shew_1482at 1707.363 kb on - strand, within Shew_1482at 1707.487 kb on - strand, within Shew_1482at 1708.093 kb on + strand, within Shew_1483at 1708.216 kb on - strand, within Shew_1483at 1708.523 kb on - strand, within Shew_1483at 1708.938 kb on + strandat 1708.967 kb on - strandat 1709.076 kb on + strand, within Shew_1484at 1709.080 kb on - strand, within Shew_1484at 1709.403 kb on + strand, within Shew_1484

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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1,707,087 + Shew_1482 0.32 +0.5
1,707,228 + Shew_1482 0.43 -0.4
1,707,264 + Shew_1482 0.46 -0.3
1,707,363 - Shew_1482 0.54 +0.2
1,707,363 - Shew_1482 0.54 -1.3
1,707,487 - Shew_1482 0.64 -0.4
1,708,093 + Shew_1483 0.19 +1.7
1,708,216 - Shew_1483 0.35 +0.8
1,708,523 - Shew_1483 0.73 +0.4
1,708,938 + -1.6
1,708,967 - -1.0
1,709,076 + Shew_1484 0.17 +0.0
1,709,080 - Shew_1484 0.18 -1.6
1,709,403 + Shew_1484 0.43 +0.4

Or see this region's nucleotide sequence