Strain Fitness in Shewanella loihica PV-4 around Shew_0939
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,078,697 | - | -0.0 | |||
1,079,033 | - | +1.1 | |||
1,079,141 | - | Shew_0938 | 0.15 | +0.2 | |
1,079,236 | + | Shew_0938 | 0.39 | -0.1 | |
1,079,889 | - | Shew_0939 | 0.19 | +1.4 | |
1,079,894 | + | Shew_0939 | 0.19 | +2.1 | |
1,079,902 | - | Shew_0939 | 0.19 | +1.6 | |
1,079,945 | - | Shew_0939 | 0.22 | +1.7 | |
1,080,021 | + | Shew_0939 | 0.27 | +2.0 | |
1,080,021 | + | Shew_0939 | 0.27 | -0.2 | |
1,080,031 | - | Shew_0939 | 0.28 | +1.9 | |
1,080,045 | + | Shew_0939 | 0.29 | +1.8 | |
1,080,076 | - | Shew_0939 | 0.31 | +2.1 | |
1,080,309 | - | Shew_0939 | 0.46 | +2.4 | |
1,080,343 | + | Shew_0939 | 0.49 | +1.3 | |
1,081,067 | - | +2.3 |
Or see this region's nucleotide sequence