Experiment: biofilm from flask tested for biofilms
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0938 and cysC are separated by 77 nucleotides cysC and Synpcc7942_0940 are separated by 44 nucleotides Synpcc7942_0940 and Synpcc7942_0941 are separated by 424 nucleotides
Synpcc7942_0938: Synpcc7942_0938 - transcriptional regulator, ArsR family, at 944,220 to 944,540
_0938
Synpcc7942_0939: cysC - adenylylsulfate kinase, at 944,618 to 945,244
cysC
Synpcc7942_0940: Synpcc7942_0940 - transcriptional regulator, XRE family, at 945,289 to 945,639
_0940
Synpcc7942_0941: Synpcc7942_0941 - ATPase, at 946,064 to 947,773
_0941
Position (kb) 945
946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.289 kb on + strand, within Synpcc7942_0938 at 944.291 kb on + strand, within Synpcc7942_0938 at 944.299 kb on - strand, within Synpcc7942_0938 at 944.307 kb on - strand, within Synpcc7942_0938 at 944.311 kb on - strand, within Synpcc7942_0938 at 944.346 kb on + strand, within Synpcc7942_0938 at 944.354 kb on - strand, within Synpcc7942_0938 at 944.354 kb on - strand, within Synpcc7942_0938 at 944.357 kb on + strand, within Synpcc7942_0938 at 944.357 kb on + strand, within Synpcc7942_0938 at 944.365 kb on - strand, within Synpcc7942_0938 at 944.365 kb on - strand, within Synpcc7942_0938 at 944.365 kb on - strand, within Synpcc7942_0938 at 944.373 kb on - strand, within Synpcc7942_0938 at 944.374 kb on + strand, within Synpcc7942_0938 at 944.382 kb on + strand, within Synpcc7942_0938 at 944.383 kb on - strand, within Synpcc7942_0938 at 944.423 kb on - strand, within Synpcc7942_0938 at 944.433 kb on - strand, within Synpcc7942_0938 at 944.457 kb on + strand, within Synpcc7942_0938 at 944.466 kb on - strand, within Synpcc7942_0938 at 944.466 kb on - strand, within Synpcc7942_0938 at 944.468 kb on + strand, within Synpcc7942_0938 at 944.480 kb on - strand, within Synpcc7942_0938 at 944.511 kb on + strand at 944.546 kb on + strand at 944.561 kb on - strand at 944.581 kb on + strand at 944.581 kb on + strand at 944.581 kb on + strand at 944.591 kb on + strand at 944.593 kb on - strand at 945.191 kb on + strand at 945.199 kb on + strand at 945.199 kb on + strand at 945.201 kb on + strand at 945.270 kb on - strand at 945.285 kb on - strand at 945.285 kb on - strand at 945.290 kb on - strand at 945.323 kb on + strand at 945.323 kb on + strand at 945.340 kb on + strand, within Synpcc7942_0940 at 945.343 kb on + strand, within Synpcc7942_0940 at 945.358 kb on + strand, within Synpcc7942_0940 at 945.365 kb on + strand, within Synpcc7942_0940 at 945.377 kb on + strand, within Synpcc7942_0940 at 945.385 kb on - strand, within Synpcc7942_0940 at 945.390 kb on - strand, within Synpcc7942_0940 at 945.512 kb on + strand, within Synpcc7942_0940 at 945.684 kb on + strand at 945.707 kb on - strand at 945.758 kb on - strand at 945.758 kb on - strand at 945.760 kb on + strand at 945.760 kb on + strand at 945.768 kb on - strand at 945.794 kb on + strand at 945.812 kb on - strand at 945.812 kb on - strand at 945.835 kb on - strand at 945.874 kb on + strand at 945.887 kb on + strand at 945.904 kb on - strand at 945.920 kb on + strand at 946.006 kb on + strand at 946.062 kb on + strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.143 kb on + strand at 946.310 kb on - strand, within Synpcc7942_0941 at 946.465 kb on - strand, within Synpcc7942_0941 at 946.490 kb on + strand, within Synpcc7942_0941 at 946.507 kb on + strand, within Synpcc7942_0941 at 946.612 kb on - strand, within Synpcc7942_0941 at 946.615 kb on + strand, within Synpcc7942_0941
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm from flask tested for biofilms remove 944,289 + Synpcc7942_0938 0.21 -0.1 944,291 + Synpcc7942_0938 0.22 +0.4 944,299 - Synpcc7942_0938 0.25 +0.0 944,307 - Synpcc7942_0938 0.27 +0.4 944,311 - Synpcc7942_0938 0.28 +0.1 944,346 + Synpcc7942_0938 0.39 +0.6 944,354 - Synpcc7942_0938 0.42 +0.1 944,354 - Synpcc7942_0938 0.42 +0.8 944,357 + Synpcc7942_0938 0.43 +0.1 944,357 + Synpcc7942_0938 0.43 +0.7 944,365 - Synpcc7942_0938 0.45 -0.5 944,365 - Synpcc7942_0938 0.45 -1.0 944,365 - Synpcc7942_0938 0.45 -0.4 944,373 - Synpcc7942_0938 0.48 -1.1 944,374 + Synpcc7942_0938 0.48 +0.8 944,382 + Synpcc7942_0938 0.50 -0.3 944,383 - Synpcc7942_0938 0.51 +0.9 944,423 - Synpcc7942_0938 0.63 -0.2 944,433 - Synpcc7942_0938 0.66 +0.0 944,457 + Synpcc7942_0938 0.74 -0.8 944,466 - Synpcc7942_0938 0.77 +0.4 944,466 - Synpcc7942_0938 0.77 -0.2 944,468 + Synpcc7942_0938 0.77 +0.5 944,480 - Synpcc7942_0938 0.81 +1.0 944,511 + +0.5 944,546 + -0.1 944,561 - -0.5 944,581 + +0.7 944,581 + +0.2 944,581 + +0.8 944,591 + +1.3 944,593 - +0.6 945,191 + -0.6 945,199 + -1.8 945,199 + +1.0 945,201 + +0.1 945,270 - +0.1 945,285 - -0.5 945,285 - -1.1 945,290 - -0.0 945,323 + -1.1 945,323 + -1.1 945,340 + Synpcc7942_0940 0.15 -0.3 945,343 + Synpcc7942_0940 0.15 +0.0 945,358 + Synpcc7942_0940 0.20 +0.0 945,365 + Synpcc7942_0940 0.22 -1.1 945,377 + Synpcc7942_0940 0.25 -0.2 945,385 - Synpcc7942_0940 0.27 -0.9 945,390 - Synpcc7942_0940 0.29 -1.4 945,512 + Synpcc7942_0940 0.64 -0.4 945,684 + -1.1 945,707 - -0.1 945,758 - +0.4 945,758 - -0.3 945,760 + -0.0 945,760 + -1.8 945,768 - +0.6 945,794 + -0.3 945,812 - +0.2 945,812 - -0.2 945,835 - -1.8 945,874 + -0.2 945,887 + +0.3 945,904 - -0.6 945,920 + +0.4 946,006 + -1.3 946,062 + -0.2 946,070 - +0.2 946,070 - +0.8 946,070 - +0.3 946,070 - -1.6 946,070 - +1.8 946,070 - +0.2 946,143 + -0.1 946,310 - Synpcc7942_0941 0.14 -0.2 946,465 - Synpcc7942_0941 0.23 +1.0 946,490 + Synpcc7942_0941 0.25 -0.1 946,507 + Synpcc7942_0941 0.26 -0.2 946,612 - Synpcc7942_0941 0.32 +0.1 946,615 + Synpcc7942_0941 0.32 -0.9
Or see this region's nucleotide sequence