Experiment: biofilm from flask tested for biofilms
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0833 and Synpcc7942_0834 are separated by 399 nucleotides Synpcc7942_0834 and ruvB are separated by 425 nucleotides
Synpcc7942_0833: Synpcc7942_0833 - hypothetical protein, at 827,112 to 828,182
_0833
Synpcc7942_0834: Synpcc7942_0834 - hypothetical protein, at 828,582 to 829,235
_0834
Synpcc7942_0835: ruvB - Holliday junction DNA helicase B, at 829,661 to 830,788
ruvB
Position (kb) 828
829
830 Strain fitness (log2 ratio) -2
-1
0
1 at 827.588 kb on - strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.628 kb on + strand, within Synpcc7942_0833 at 827.629 kb on + strand, within Synpcc7942_0833 at 827.636 kb on - strand, within Synpcc7942_0833 at 827.666 kb on + strand, within Synpcc7942_0833 at 827.688 kb on - strand, within Synpcc7942_0833 at 827.857 kb on - strand, within Synpcc7942_0833 at 827.866 kb on + strand, within Synpcc7942_0833 at 827.904 kb on - strand, within Synpcc7942_0833 at 827.961 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.111 kb on + strand at 828.144 kb on - strand at 828.160 kb on + strand at 828.168 kb on - strand at 828.185 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.195 kb on + strand at 828.195 kb on + strand at 828.201 kb on - strand at 828.203 kb on - strand at 828.203 kb on - strand at 828.214 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.275 kb on + strand at 828.288 kb on - strand at 828.343 kb on - strand at 828.345 kb on + strand at 828.356 kb on - strand at 828.368 kb on - strand at 828.374 kb on - strand at 828.472 kb on - strand at 828.472 kb on - strand at 828.473 kb on - strand at 828.475 kb on + strand at 828.499 kb on - strand at 828.532 kb on - strand at 828.532 kb on - strand at 828.564 kb on + strand at 828.570 kb on - strand at 828.572 kb on - strand at 828.593 kb on + strand at 828.664 kb on + strand, within Synpcc7942_0834 at 828.670 kb on - strand, within Synpcc7942_0834 at 828.682 kb on - strand, within Synpcc7942_0834 at 828.719 kb on + strand, within Synpcc7942_0834 at 828.727 kb on - strand, within Synpcc7942_0834 at 828.741 kb on + strand, within Synpcc7942_0834 at 828.748 kb on + strand, within Synpcc7942_0834 at 828.749 kb on - strand, within Synpcc7942_0834 at 828.761 kb on - strand, within Synpcc7942_0834 at 828.769 kb on + strand, within Synpcc7942_0834 at 828.775 kb on + strand, within Synpcc7942_0834 at 828.783 kb on - strand, within Synpcc7942_0834 at 828.795 kb on - strand, within Synpcc7942_0834 at 828.824 kb on + strand, within Synpcc7942_0834 at 828.833 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.928 kb on + strand, within Synpcc7942_0834 at 828.931 kb on + strand, within Synpcc7942_0834 at 828.936 kb on + strand, within Synpcc7942_0834 at 828.949 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.985 kb on - strand, within Synpcc7942_0834 at 829.015 kb on - strand, within Synpcc7942_0834 at 829.025 kb on + strand, within Synpcc7942_0834 at 829.031 kb on - strand, within Synpcc7942_0834 at 829.158 kb on + strand, within Synpcc7942_0834 at 829.168 kb on - strand, within Synpcc7942_0834 at 829.197 kb on + strand at 829.197 kb on + strand at 829.207 kb on + strand at 829.207 kb on + strand at 829.208 kb on + strand at 829.215 kb on - strand at 829.284 kb on - strand at 829.354 kb on + strand at 829.354 kb on + strand at 829.375 kb on + strand at 829.383 kb on - strand at 829.398 kb on - strand at 829.428 kb on + strand at 829.433 kb on + strand at 829.434 kb on - strand at 829.434 kb on - strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.460 kb on + strand at 829.466 kb on + strand at 829.472 kb on - strand at 829.484 kb on + strand at 829.487 kb on - strand at 829.570 kb on - strand at 829.598 kb on + strand at 829.603 kb on + strand at 829.611 kb on + strand at 829.619 kb on - strand at 829.628 kb on + strand at 829.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm from flask tested for biofilms remove 827,588 - Synpcc7942_0833 0.44 -0.6 827,627 + Synpcc7942_0833 0.48 -0.1 827,627 + Synpcc7942_0833 0.48 +0.1 827,628 + Synpcc7942_0833 0.48 +0.4 827,629 + Synpcc7942_0833 0.48 -0.2 827,636 - Synpcc7942_0833 0.49 -0.8 827,666 + Synpcc7942_0833 0.52 +1.1 827,688 - Synpcc7942_0833 0.54 -0.8 827,857 - Synpcc7942_0833 0.70 -0.5 827,866 + Synpcc7942_0833 0.70 -0.1 827,904 - Synpcc7942_0833 0.74 +0.3 827,961 + Synpcc7942_0833 0.79 +0.4 828,047 + Synpcc7942_0833 0.87 -0.8 828,047 + Synpcc7942_0833 0.87 -0.7 828,111 + -0.3 828,144 - -0.0 828,160 + -0.3 828,168 - -0.2 828,185 + -0.3 828,193 + +0.1 828,193 + -0.2 828,193 + +0.1 828,193 + -0.6 828,195 + +0.2 828,195 + -1.0 828,201 - +0.3 828,203 - +0.0 828,203 - -0.4 828,214 + -0.6 828,219 + +0.1 828,219 + +0.7 828,219 + -0.0 828,219 + -0.4 828,219 + -0.3 828,219 + -0.0 828,219 + +0.5 828,227 - +0.0 828,227 - -0.9 828,227 - -0.4 828,227 - -0.1 828,227 - -0.7 828,275 + +0.4 828,288 - -0.2 828,343 - +0.4 828,345 + +0.6 828,356 - -1.2 828,368 - -0.6 828,374 - +0.2 828,472 - -0.7 828,472 - +0.6 828,473 - -0.5 828,475 + -0.1 828,499 - -0.5 828,532 - +0.7 828,532 - +0.3 828,564 + -0.6 828,570 - +0.1 828,572 - -0.8 828,593 + +0.0 828,664 + Synpcc7942_0834 0.13 -0.3 828,670 - Synpcc7942_0834 0.13 -0.3 828,682 - Synpcc7942_0834 0.15 -0.6 828,719 + Synpcc7942_0834 0.21 -0.2 828,727 - Synpcc7942_0834 0.22 -1.9 828,741 + Synpcc7942_0834 0.24 -0.1 828,748 + Synpcc7942_0834 0.25 +0.6 828,749 - Synpcc7942_0834 0.26 -0.7 828,761 - Synpcc7942_0834 0.27 -0.2 828,769 + Synpcc7942_0834 0.29 +0.3 828,775 + Synpcc7942_0834 0.30 -0.8 828,783 - Synpcc7942_0834 0.31 +0.1 828,795 - Synpcc7942_0834 0.33 -0.9 828,824 + Synpcc7942_0834 0.37 -0.5 828,833 + Synpcc7942_0834 0.38 -1.2 828,896 + Synpcc7942_0834 0.48 -0.2 828,896 + Synpcc7942_0834 0.48 -0.1 828,904 - Synpcc7942_0834 0.49 -0.2 828,904 - Synpcc7942_0834 0.49 +0.0 828,904 - Synpcc7942_0834 0.49 -0.4 828,928 + Synpcc7942_0834 0.53 -0.2 828,931 + Synpcc7942_0834 0.53 -0.6 828,936 + Synpcc7942_0834 0.54 -0.1 828,949 - Synpcc7942_0834 0.56 -1.8 828,977 - Synpcc7942_0834 0.60 +0.2 828,977 - Synpcc7942_0834 0.60 +0.0 828,985 - Synpcc7942_0834 0.62 -0.1 829,015 - Synpcc7942_0834 0.66 +0.3 829,025 + Synpcc7942_0834 0.68 -0.6 829,031 - Synpcc7942_0834 0.69 +0.6 829,158 + Synpcc7942_0834 0.88 -0.4 829,168 - Synpcc7942_0834 0.90 -1.0 829,197 + -0.3 829,197 + -1.3 829,207 + -0.1 829,207 + +0.1 829,208 + -0.2 829,215 - +0.5 829,284 - -0.4 829,354 + -0.7 829,354 + -1.5 829,375 + +0.2 829,383 - -1.4 829,398 - +0.1 829,428 + -0.4 829,433 + +1.5 829,434 - +1.0 829,434 - +0.5 829,450 + +0.3 829,450 + -0.4 829,450 + -0.9 829,450 + +1.2 829,450 + +0.8 829,450 + -1.4 829,450 + -0.1 829,450 + +0.0 829,458 - +0.0 829,458 - +1.3 829,458 - +0.2 829,458 - +1.2 829,458 - +0.4 829,458 - +0.0 829,458 - -0.5 829,458 - +0.3 829,458 - +0.1 829,458 - +0.3 829,458 - +0.2 829,458 - -0.1 829,458 - -0.4 829,458 - +0.2 829,458 - +0.3 829,458 - -0.2 829,460 + -0.8 829,466 + -0.1 829,472 - -1.2 829,484 + +0.3 829,487 - -0.5 829,570 - +0.2 829,598 + -0.9 829,603 + +0.3 829,611 + +0.2 829,619 - +0.4 829,628 + +0.9 829,634 - -0.8
Or see this region's nucleotide sequence