Experiment: biofilm from flask tested for biofilms
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0443 and Synpcc7942_0444 are separated by 39 nucleotides Synpcc7942_0444 and oppC are separated by 342 nucleotides
Synpcc7942_0443: Synpcc7942_0443 - hypothetical protein, at 433,076 to 434,317
_0443
Synpcc7942_0444: Synpcc7942_0444 - hypothetical protein, at 434,357 to 435,040
_0444
Synpcc7942_0445: oppC - ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like, at 435,383 to 436,438
oppC
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1
2 at 433.373 kb on + strand, within Synpcc7942_0443 at 433.376 kb on - strand, within Synpcc7942_0443 at 433.506 kb on + strand, within Synpcc7942_0443 at 433.512 kb on - strand, within Synpcc7942_0443 at 433.516 kb on + strand, within Synpcc7942_0443 at 433.594 kb on + strand, within Synpcc7942_0443 at 433.594 kb on + strand, within Synpcc7942_0443 at 433.602 kb on - strand, within Synpcc7942_0443 at 433.602 kb on - strand, within Synpcc7942_0443 at 433.603 kb on - strand, within Synpcc7942_0443 at 433.674 kb on + strand, within Synpcc7942_0443 at 433.680 kb on + strand, within Synpcc7942_0443 at 433.750 kb on + strand, within Synpcc7942_0443 at 433.763 kb on - strand, within Synpcc7942_0443 at 433.778 kb on - strand, within Synpcc7942_0443 at 433.788 kb on - strand at 433.811 kb on + strand, within Synpcc7942_0443 at 433.811 kb on + strand, within Synpcc7942_0443 at 433.876 kb on + strand, within Synpcc7942_0443 at 433.882 kb on + strand, within Synpcc7942_0443 at 433.890 kb on - strand, within Synpcc7942_0443 at 433.890 kb on - strand, within Synpcc7942_0443 at 433.918 kb on - strand, within Synpcc7942_0443 at 433.920 kb on - strand, within Synpcc7942_0443 at 433.957 kb on - strand, within Synpcc7942_0443 at 434.009 kb on - strand, within Synpcc7942_0443 at 434.104 kb on + strand, within Synpcc7942_0443 at 434.112 kb on - strand, within Synpcc7942_0443 at 434.153 kb on - strand, within Synpcc7942_0443 at 434.174 kb on + strand, within Synpcc7942_0443 at 434.182 kb on - strand, within Synpcc7942_0443 at 434.182 kb on - strand, within Synpcc7942_0443 at 434.182 kb on - strand, within Synpcc7942_0443 at 434.211 kb on + strand at 434.217 kb on + strand at 434.221 kb on + strand at 434.226 kb on - strand at 434.227 kb on + strand at 434.236 kb on + strand at 434.243 kb on - strand at 434.244 kb on - strand at 434.251 kb on - strand at 434.262 kb on - strand at 434.306 kb on + strand at 434.312 kb on + strand at 434.315 kb on + strand at 434.343 kb on + strand at 434.349 kb on + strand at 434.361 kb on - strand at 434.378 kb on + strand at 434.383 kb on + strand at 434.383 kb on + strand at 434.391 kb on - strand at 434.506 kb on - strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.522 kb on - strand, within Synpcc7942_0444 at 434.523 kb on + strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.526 kb on + strand, within Synpcc7942_0444 at 434.526 kb on + strand, within Synpcc7942_0444 at 434.528 kb on + strand, within Synpcc7942_0444 at 434.533 kb on + strand, within Synpcc7942_0444 at 434.534 kb on - strand, within Synpcc7942_0444 at 434.541 kb on - strand, within Synpcc7942_0444 at 434.567 kb on - strand, within Synpcc7942_0444 at 434.652 kb on + strand, within Synpcc7942_0444 at 434.660 kb on - strand, within Synpcc7942_0444 at 434.692 kb on - strand, within Synpcc7942_0444 at 434.731 kb on - strand, within Synpcc7942_0444 at 434.749 kb on + strand, within Synpcc7942_0444 at 434.754 kb on - strand, within Synpcc7942_0444 at 434.789 kb on + strand, within Synpcc7942_0444 at 434.846 kb on - strand, within Synpcc7942_0444 at 434.856 kb on - strand, within Synpcc7942_0444 at 434.875 kb on + strand, within Synpcc7942_0444 at 434.898 kb on + strand, within Synpcc7942_0444 at 434.948 kb on + strand, within Synpcc7942_0444 at 435.016 kb on + strand at 435.016 kb on + strand at 435.016 kb on + strand at 435.018 kb on + strand at 435.026 kb on - strand at 435.043 kb on - strand at 435.117 kb on - strand at 435.308 kb on - strand at 435.310 kb on + strand at 435.310 kb on + strand at 435.387 kb on - strand at 435.387 kb on - strand at 435.401 kb on - strand at 435.434 kb on + strand at 435.435 kb on - strand at 435.442 kb on - strand at 435.442 kb on - strand at 435.450 kb on + strand at 435.460 kb on + strand at 435.526 kb on - strand, within oppC at 435.529 kb on + strand, within oppC at 435.537 kb on - strand at 435.539 kb on - strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.580 kb on - strand, within oppC at 435.580 kb on - strand, within oppC at 435.599 kb on + strand, within oppC at 435.599 kb on + strand, within oppC at 435.643 kb on - strand, within oppC at 435.650 kb on - strand, within oppC at 435.692 kb on - strand, within oppC at 435.695 kb on - strand, within oppC at 435.755 kb on + strand, within oppC at 435.768 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.816 kb on - strand, within oppC at 435.818 kb on + strand, within oppC at 435.821 kb on - strand, within oppC at 435.821 kb on - strand, within oppC at 435.824 kb on + strand, within oppC at 435.826 kb on - strand, within oppC at 435.829 kb on - strand, within oppC at 435.830 kb on + strand, within oppC at 435.835 kb on + strand, within oppC at 435.838 kb on - strand, within oppC at 435.865 kb on + strand, within oppC at 435.876 kb on + strand, within oppC at 435.968 kb on + strand, within oppC at 435.969 kb on + strand, within oppC at 435.976 kb on - strand, within oppC at 436.013 kb on + strand, within oppC at 436.024 kb on + strand, within oppC at 436.028 kb on + strand, within oppC
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm from flask tested for biofilms remove 433,373 + Synpcc7942_0443 0.24 -0.5 433,376 - Synpcc7942_0443 0.24 -0.9 433,506 + Synpcc7942_0443 0.35 -0.1 433,512 - Synpcc7942_0443 0.35 -0.5 433,516 + Synpcc7942_0443 0.35 +0.1 433,594 + Synpcc7942_0443 0.42 +0.1 433,594 + Synpcc7942_0443 0.42 +0.0 433,602 - Synpcc7942_0443 0.42 -2.6 433,602 - Synpcc7942_0443 0.42 -0.3 433,603 - Synpcc7942_0443 0.42 -0.3 433,674 + Synpcc7942_0443 0.48 -0.2 433,680 + Synpcc7942_0443 0.49 +0.4 433,750 + Synpcc7942_0443 0.54 -0.2 433,763 - Synpcc7942_0443 0.55 -0.4 433,778 - Synpcc7942_0443 0.57 +0.4 433,788 - -0.2 433,811 + Synpcc7942_0443 0.59 -0.3 433,811 + Synpcc7942_0443 0.59 -0.0 433,876 + Synpcc7942_0443 0.64 -0.4 433,882 + Synpcc7942_0443 0.65 -0.4 433,890 - Synpcc7942_0443 0.66 +0.8 433,890 - Synpcc7942_0443 0.66 -0.1 433,918 - Synpcc7942_0443 0.68 +0.1 433,920 - Synpcc7942_0443 0.68 -0.5 433,957 - Synpcc7942_0443 0.71 +0.9 434,009 - Synpcc7942_0443 0.75 +0.7 434,104 + Synpcc7942_0443 0.83 +0.3 434,112 - Synpcc7942_0443 0.83 -0.1 434,153 - Synpcc7942_0443 0.87 -0.5 434,174 + Synpcc7942_0443 0.88 +0.2 434,182 - Synpcc7942_0443 0.89 -0.3 434,182 - Synpcc7942_0443 0.89 +0.2 434,182 - Synpcc7942_0443 0.89 -0.9 434,211 + -0.5 434,217 + +0.1 434,221 + -0.3 434,226 - +0.5 434,227 + -0.4 434,236 + -0.3 434,243 - -0.5 434,244 - +0.8 434,251 - +0.1 434,262 - -0.5 434,306 + -0.2 434,312 + +1.3 434,315 + -0.9 434,343 + +0.1 434,349 + -0.7 434,361 - -1.1 434,378 + -0.0 434,383 + +0.9 434,383 + -0.1 434,391 - -0.1 434,506 - Synpcc7942_0444 0.22 -0.5 434,516 + Synpcc7942_0444 0.23 +0.4 434,516 + Synpcc7942_0444 0.23 -2.0 434,516 + Synpcc7942_0444 0.23 -0.3 434,522 - Synpcc7942_0444 0.24 -0.2 434,523 + Synpcc7942_0444 0.24 -0.3 434,524 - Synpcc7942_0444 0.24 -0.5 434,524 - Synpcc7942_0444 0.24 -0.2 434,524 - Synpcc7942_0444 0.24 -0.5 434,526 + Synpcc7942_0444 0.25 -0.8 434,526 + Synpcc7942_0444 0.25 -0.4 434,528 + Synpcc7942_0444 0.25 -0.5 434,533 + Synpcc7942_0444 0.26 -0.3 434,534 - Synpcc7942_0444 0.26 -0.1 434,541 - Synpcc7942_0444 0.27 +0.3 434,567 - Synpcc7942_0444 0.31 -0.8 434,652 + Synpcc7942_0444 0.43 +1.9 434,660 - Synpcc7942_0444 0.44 +0.2 434,692 - Synpcc7942_0444 0.49 +0.0 434,731 - Synpcc7942_0444 0.55 -0.2 434,749 + Synpcc7942_0444 0.57 -1.1 434,754 - Synpcc7942_0444 0.58 -0.7 434,789 + Synpcc7942_0444 0.63 -0.8 434,846 - Synpcc7942_0444 0.71 -1.3 434,856 - Synpcc7942_0444 0.73 -0.6 434,875 + Synpcc7942_0444 0.76 +0.1 434,898 + Synpcc7942_0444 0.79 -1.8 434,948 + Synpcc7942_0444 0.86 -0.2 435,016 + +0.7 435,016 + -0.6 435,016 + -1.0 435,018 + -0.4 435,026 - +0.0 435,043 - -0.2 435,117 - -0.5 435,308 - -0.2 435,310 + +0.3 435,310 + -0.1 435,387 - -1.6 435,387 - -0.4 435,401 - -0.1 435,434 + -1.0 435,435 - +0.3 435,442 - +0.3 435,442 - -0.6 435,450 + -0.1 435,460 + +0.5 435,526 - oppC Synpcc7942_0445 0.14 +0.4 435,529 + oppC Synpcc7942_0445 0.14 -1.0 435,537 - -1.8 435,539 - oppC Synpcc7942_0445 0.15 +0.8 435,572 + oppC Synpcc7942_0445 0.18 +1.0 435,572 + oppC Synpcc7942_0445 0.18 -0.0 435,572 + oppC Synpcc7942_0445 0.18 +0.4 435,572 + oppC Synpcc7942_0445 0.18 -0.3 435,580 - oppC Synpcc7942_0445 0.19 +0.5 435,580 - oppC Synpcc7942_0445 0.19 +0.9 435,599 + oppC Synpcc7942_0445 0.20 -0.3 435,599 + oppC Synpcc7942_0445 0.20 -0.3 435,643 - oppC Synpcc7942_0445 0.25 +0.6 435,650 - oppC Synpcc7942_0445 0.25 -1.6 435,692 - oppC Synpcc7942_0445 0.29 -0.2 435,695 - oppC Synpcc7942_0445 0.30 +0.4 435,755 + oppC Synpcc7942_0445 0.35 +0.1 435,768 + oppC Synpcc7942_0445 0.36 -0.0 435,813 + oppC Synpcc7942_0445 0.41 +0.9 435,813 + oppC Synpcc7942_0445 0.41 +0.3 435,813 + oppC Synpcc7942_0445 0.41 -0.2 435,816 - oppC Synpcc7942_0445 0.41 -0.7 435,818 + oppC Synpcc7942_0445 0.41 +1.0 435,821 - oppC Synpcc7942_0445 0.41 +0.2 435,821 - oppC Synpcc7942_0445 0.41 -0.1 435,824 + oppC Synpcc7942_0445 0.42 +0.1 435,826 - oppC Synpcc7942_0445 0.42 -0.2 435,829 - oppC Synpcc7942_0445 0.42 -1.4 435,830 + oppC Synpcc7942_0445 0.42 -0.6 435,835 + oppC Synpcc7942_0445 0.43 -0.7 435,838 - oppC Synpcc7942_0445 0.43 -0.2 435,865 + oppC Synpcc7942_0445 0.46 -0.6 435,876 + oppC Synpcc7942_0445 0.47 -0.2 435,968 + oppC Synpcc7942_0445 0.55 -1.7 435,969 + oppC Synpcc7942_0445 0.55 -0.7 435,976 - oppC Synpcc7942_0445 0.56 +0.5 436,013 + oppC Synpcc7942_0445 0.60 +0.2 436,024 + oppC Synpcc7942_0445 0.61 +0.0 436,028 + oppC Synpcc7942_0445 0.61 +0.7
Or see this region's nucleotide sequence