Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_780 and Pf6N2E2_781 are separated by 335 nucleotides Pf6N2E2_781 and Pf6N2E2_782 are separated by 235 nucleotides
Pf6N2E2_780 - FIG00955564: hypothetical protein, at 890,228 to 892,219
_780
Pf6N2E2_781 - Outer membrane autotransporter barrel, at 892,555 to 894,657
_781
Pf6N2E2_782 - hypothetical protein, at 894,893 to 896,386
_782
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.569 kb on + strand, within Pf6N2E2_780 at 891.663 kb on - strand, within Pf6N2E2_780 at 891.811 kb on - strand, within Pf6N2E2_780 at 891.842 kb on + strand, within Pf6N2E2_780 at 891.843 kb on - strand, within Pf6N2E2_780 at 891.855 kb on - strand, within Pf6N2E2_780 at 891.883 kb on - strand, within Pf6N2E2_780 at 891.896 kb on + strand, within Pf6N2E2_780 at 892.044 kb on + strand at 892.052 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.076 kb on + strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.077 kb on - strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.124 kb on + strand at 892.125 kb on - strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.130 kb on + strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.131 kb on - strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.137 kb on + strand at 892.138 kb on - strand at 892.138 kb on - strand at 892.153 kb on + strand at 892.153 kb on + strand at 892.191 kb on + strand at 892.191 kb on + strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.192 kb on - strand at 892.232 kb on - strand at 892.280 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.331 kb on + strand at 892.332 kb on - strand at 892.332 kb on - strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.335 kb on + strand at 892.336 kb on - strand at 892.349 kb on + strand at 892.356 kb on + strand at 892.371 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.374 kb on + strand at 892.375 kb on - strand at 892.375 kb on - strand at 892.420 kb on + strand at 892.451 kb on + strand at 892.452 kb on - strand at 892.475 kb on + strand at 892.482 kb on + strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.483 kb on - strand at 892.484 kb on + strand at 892.521 kb on + strand at 892.551 kb on + strand at 892.552 kb on - strand at 892.552 kb on - strand at 892.603 kb on + strand at 892.617 kb on + strand at 892.688 kb on + strand at 892.689 kb on - strand at 892.689 kb on - strand at 892.740 kb on + strand at 892.743 kb on + strand at 892.743 kb on + strand at 892.744 kb on - strand at 892.744 kb on - strand at 892.785 kb on + strand, within Pf6N2E2_781 at 892.787 kb on + strand, within Pf6N2E2_781 at 893.019 kb on + strand, within Pf6N2E2_781 at 893.052 kb on - strand, within Pf6N2E2_781 at 893.196 kb on + strand, within Pf6N2E2_781 at 893.197 kb on - strand, within Pf6N2E2_781 at 893.346 kb on + strand, within Pf6N2E2_781 at 893.346 kb on + strand, within Pf6N2E2_781 at 893.347 kb on - strand, within Pf6N2E2_781 at 893.347 kb on - strand, within Pf6N2E2_781 at 893.440 kb on + strand, within Pf6N2E2_781 at 893.440 kb on + strand, within Pf6N2E2_781 at 893.441 kb on - strand, within Pf6N2E2_781 at 893.441 kb on - strand, within Pf6N2E2_781 at 893.442 kb on + strand, within Pf6N2E2_781 at 893.442 kb on + strand, within Pf6N2E2_781 at 893.442 kb on + strand, within Pf6N2E2_781 at 893.443 kb on - strand, within Pf6N2E2_781 at 893.526 kb on + strand, within Pf6N2E2_781 at 893.527 kb on - strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.553 kb on + strand, within Pf6N2E2_781 at 893.554 kb on - strand, within Pf6N2E2_781 at 893.673 kb on + strand, within Pf6N2E2_781 at 893.673 kb on + strand, within Pf6N2E2_781 at 893.673 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.677 kb on + strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.678 kb on - strand, within Pf6N2E2_781 at 893.683 kb on + strand, within Pf6N2E2_781 at 893.683 kb on + strand, within Pf6N2E2_781 at 893.717 kb on - strand, within Pf6N2E2_781 at 893.717 kb on - strand, within Pf6N2E2_781 at 893.878 kb on + strand, within Pf6N2E2_781 at 893.878 kb on + strand, within Pf6N2E2_781 at 893.879 kb on - strand, within Pf6N2E2_781 at 893.920 kb on + strand, within Pf6N2E2_781 at 893.921 kb on - strand, within Pf6N2E2_781 at 893.922 kb on + strand, within Pf6N2E2_781 at 893.922 kb on + strand, within Pf6N2E2_781 at 893.922 kb on + strand, within Pf6N2E2_781 at 893.923 kb on - strand, within Pf6N2E2_781 at 894.013 kb on + strand, within Pf6N2E2_781 at 894.015 kb on + strand, within Pf6N2E2_781 at 894.015 kb on + strand, within Pf6N2E2_781 at 894.070 kb on + strand, within Pf6N2E2_781 at 894.082 kb on + strand, within Pf6N2E2_781 at 894.112 kb on + strand, within Pf6N2E2_781 at 894.112 kb on + strand, within Pf6N2E2_781 at 894.115 kb on + strand, within Pf6N2E2_781 at 894.115 kb on + strand, within Pf6N2E2_781 at 894.116 kb on - strand, within Pf6N2E2_781 at 894.199 kb on + strand, within Pf6N2E2_781 at 894.199 kb on + strand, within Pf6N2E2_781 at 894.243 kb on + strand, within Pf6N2E2_781 at 894.243 kb on + strand, within Pf6N2E2_781 at 894.262 kb on + strand, within Pf6N2E2_781 at 894.262 kb on + strand, within Pf6N2E2_781 at 894.262 kb on + strand, within Pf6N2E2_781 at 894.358 kb on + strand, within Pf6N2E2_781 at 894.358 kb on + strand, within Pf6N2E2_781 at 894.359 kb on - strand, within Pf6N2E2_781 at 894.492 kb on + strand at 894.492 kb on + strand at 894.492 kb on + strand at 894.492 kb on + strand at 894.492 kb on + strand at 894.592 kb on + strand at 894.629 kb on + strand at 894.646 kb on + strand at 894.669 kb on + strand at 894.803 kb on - strand at 894.803 kb on - strand at 894.827 kb on + strand at 894.827 kb on + strand at 894.827 kb on + strand at 894.827 kb on + strand at 894.847 kb on + strand at 894.847 kb on + strand at 894.882 kb on + strand at 894.883 kb on - strand at 894.947 kb on + strand at 895.009 kb on + strand at 895.010 kb on - strand at 895.010 kb on - strand at 895.010 kb on - strand at 895.010 kb on - strand at 895.043 kb on - strand, within Pf6N2E2_782 at 895.101 kb on - strand, within Pf6N2E2_782 at 895.169 kb on + strand, within Pf6N2E2_782 at 895.170 kb on - strand, within Pf6N2E2_782 at 895.170 kb on - strand, within Pf6N2E2_782 at 895.186 kb on - strand, within Pf6N2E2_782 at 895.186 kb on - strand, within Pf6N2E2_782 at 895.212 kb on - strand, within Pf6N2E2_782 at 895.221 kb on + strand, within Pf6N2E2_782 at 895.221 kb on + strand, within Pf6N2E2_782 at 895.221 kb on + strand, within Pf6N2E2_782 at 895.229 kb on + strand, within Pf6N2E2_782 at 895.229 kb on + strand, within Pf6N2E2_782 at 895.230 kb on - strand, within Pf6N2E2_782 at 895.261 kb on + strand, within Pf6N2E2_782 at 895.262 kb on - strand, within Pf6N2E2_782 at 895.358 kb on + strand, within Pf6N2E2_782 at 895.358 kb on + strand, within Pf6N2E2_782 at 895.359 kb on - strand, within Pf6N2E2_782 at 895.359 kb on - strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.362 kb on + strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.363 kb on - strand, within Pf6N2E2_782 at 895.444 kb on + strand, within Pf6N2E2_782 at 895.445 kb on - strand, within Pf6N2E2_782 at 895.445 kb on - strand, within Pf6N2E2_782 at 895.445 kb on - strand, within Pf6N2E2_782 at 895.451 kb on + strand, within Pf6N2E2_782 at 895.451 kb on + strand, within Pf6N2E2_782 at 895.451 kb on + strand, within Pf6N2E2_782 at 895.452 kb on - strand, within Pf6N2E2_782 at 895.491 kb on + strand, within Pf6N2E2_782 at 895.491 kb on + strand, within Pf6N2E2_782 at 895.547 kb on + strand, within Pf6N2E2_782 at 895.548 kb on - strand, within Pf6N2E2_782 at 895.548 kb on - strand, within Pf6N2E2_782 at 895.548 kb on - strand, within Pf6N2E2_782
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 891,569 + Pf6N2E2_780 0.67 +0.6 891,663 - Pf6N2E2_780 0.72 +0.1 891,811 - Pf6N2E2_780 0.79 +2.2 891,842 + Pf6N2E2_780 0.81 -0.6 891,843 - Pf6N2E2_780 0.81 +0.0 891,855 - Pf6N2E2_780 0.82 +0.8 891,883 - Pf6N2E2_780 0.83 +0.6 891,896 + Pf6N2E2_780 0.84 +0.8 892,044 + +0.7 892,052 + +0.7 892,076 + -0.3 892,076 + +0.1 892,076 + -0.2 892,076 + -0.2 892,076 + +0.9 892,076 + +0.5 892,076 + +0.1 892,076 + +0.1 892,076 + +1.1 892,076 + -0.1 892,076 + +0.5 892,076 + +0.1 892,077 - -0.3 892,077 - -0.7 892,077 - +0.0 892,077 - +0.6 892,077 - -0.1 892,124 + +0.1 892,124 + -0.0 892,124 + -2.5 892,125 - -0.1 892,130 + +0.4 892,130 + +0.4 892,130 + +0.8 892,130 + -1.4 892,131 - +0.9 892,131 - -0.9 892,131 - +1.5 892,131 - +0.9 892,131 - -1.8 892,137 + +0.2 892,137 + +1.0 892,137 + -1.5 892,137 + +0.1 892,137 + +0.8 892,137 + +0.8 892,138 - +2.5 892,138 - +0.5 892,153 + -0.0 892,153 + +0.3 892,191 + -0.3 892,191 + +0.8 892,192 - -0.5 892,192 - +0.3 892,192 - +1.5 892,232 - +1.0 892,280 + -0.6 892,331 + +0.5 892,331 + +0.5 892,331 + +1.0 892,331 + +0.4 892,332 - -1.2 892,332 - +0.2 892,335 + -0.2 892,335 + -0.6 892,335 + -0.6 892,336 - +0.1 892,349 + +1.0 892,356 + +0.8 892,371 + -0.3 892,374 + -0.5 892,374 + +0.1 892,374 + +1.5 892,375 - -1.2 892,375 - +0.3 892,420 + -0.8 892,451 + +0.3 892,452 - +0.6 892,475 + +1.1 892,482 + +0.0 892,483 - +0.3 892,483 - +0.0 892,483 - +0.6 892,484 + +0.8 892,521 + +0.6 892,551 + +1.3 892,552 - -0.4 892,552 - +0.3 892,603 + -0.7 892,617 + +0.5 892,688 + +1.5 892,689 - +0.7 892,689 - -0.3 892,740 + +0.2 892,743 + +0.5 892,743 + +0.3 892,744 - +0.5 892,744 - +0.7 892,785 + Pf6N2E2_781 0.11 +0.2 892,787 + Pf6N2E2_781 0.11 +1.0 893,019 + Pf6N2E2_781 0.22 -0.1 893,052 - Pf6N2E2_781 0.24 -0.6 893,196 + Pf6N2E2_781 0.30 +0.4 893,197 - Pf6N2E2_781 0.31 +2.0 893,346 + Pf6N2E2_781 0.38 +0.5 893,346 + Pf6N2E2_781 0.38 -0.0 893,347 - Pf6N2E2_781 0.38 +0.8 893,347 - Pf6N2E2_781 0.38 +0.7 893,440 + Pf6N2E2_781 0.42 +0.6 893,440 + Pf6N2E2_781 0.42 +0.3 893,441 - Pf6N2E2_781 0.42 -0.5 893,441 - Pf6N2E2_781 0.42 -2.3 893,442 + Pf6N2E2_781 0.42 +1.0 893,442 + Pf6N2E2_781 0.42 +0.7 893,442 + Pf6N2E2_781 0.42 +0.9 893,443 - Pf6N2E2_781 0.42 +0.7 893,526 + Pf6N2E2_781 0.46 +0.4 893,527 - Pf6N2E2_781 0.46 -0.3 893,553 + Pf6N2E2_781 0.47 +0.8 893,553 + Pf6N2E2_781 0.47 -0.2 893,553 + Pf6N2E2_781 0.47 +0.1 893,553 + Pf6N2E2_781 0.47 +0.2 893,553 + Pf6N2E2_781 0.47 +0.2 893,553 + Pf6N2E2_781 0.47 +0.5 893,554 - Pf6N2E2_781 0.48 +0.1 893,673 + Pf6N2E2_781 0.53 -0.2 893,673 + Pf6N2E2_781 0.53 +0.5 893,673 + Pf6N2E2_781 0.53 -0.3 893,677 + Pf6N2E2_781 0.53 +1.0 893,677 + Pf6N2E2_781 0.53 +0.1 893,677 + Pf6N2E2_781 0.53 +0.2 893,677 + Pf6N2E2_781 0.53 -0.6 893,677 + Pf6N2E2_781 0.53 +0.3 893,677 + Pf6N2E2_781 0.53 +1.1 893,678 - Pf6N2E2_781 0.53 +1.3 893,678 - Pf6N2E2_781 0.53 -0.1 893,678 - Pf6N2E2_781 0.53 +0.7 893,678 - Pf6N2E2_781 0.53 +0.6 893,683 + Pf6N2E2_781 0.54 +1.0 893,683 + Pf6N2E2_781 0.54 +0.7 893,717 - Pf6N2E2_781 0.55 +1.0 893,717 - Pf6N2E2_781 0.55 +1.8 893,878 + Pf6N2E2_781 0.63 +1.1 893,878 + Pf6N2E2_781 0.63 +0.7 893,879 - Pf6N2E2_781 0.63 +0.9 893,920 + Pf6N2E2_781 0.65 -0.1 893,921 - Pf6N2E2_781 0.65 -0.7 893,922 + Pf6N2E2_781 0.65 -0.4 893,922 + Pf6N2E2_781 0.65 +0.1 893,922 + Pf6N2E2_781 0.65 +0.5 893,923 - Pf6N2E2_781 0.65 +0.5 894,013 + Pf6N2E2_781 0.69 -0.1 894,015 + Pf6N2E2_781 0.69 +1.2 894,015 + Pf6N2E2_781 0.69 -1.6 894,070 + Pf6N2E2_781 0.72 -0.0 894,082 + Pf6N2E2_781 0.73 +0.8 894,112 + Pf6N2E2_781 0.74 +0.7 894,112 + Pf6N2E2_781 0.74 +0.8 894,115 + Pf6N2E2_781 0.74 -0.2 894,115 + Pf6N2E2_781 0.74 +0.1 894,116 - Pf6N2E2_781 0.74 +0.3 894,199 + Pf6N2E2_781 0.78 -0.7 894,199 + Pf6N2E2_781 0.78 +0.7 894,243 + Pf6N2E2_781 0.80 +0.6 894,243 + Pf6N2E2_781 0.80 -0.0 894,262 + Pf6N2E2_781 0.81 +2.0 894,262 + Pf6N2E2_781 0.81 +0.9 894,262 + Pf6N2E2_781 0.81 +0.5 894,358 + Pf6N2E2_781 0.86 +0.4 894,358 + Pf6N2E2_781 0.86 +1.2 894,359 - Pf6N2E2_781 0.86 -0.1 894,492 + -0.2 894,492 + +0.4 894,492 + +1.0 894,492 + +0.5 894,492 + +0.6 894,592 + -0.5 894,629 + -0.8 894,646 + +1.2 894,669 + -0.0 894,803 - +0.4 894,803 - -0.7 894,827 + +1.6 894,827 + -0.7 894,827 + -0.0 894,827 + -0.6 894,847 + +0.5 894,847 + -0.0 894,882 + +0.3 894,883 - +0.7 894,947 + +0.9 895,009 + -0.3 895,010 - -1.8 895,010 - +0.4 895,010 - -0.8 895,010 - +0.8 895,043 - Pf6N2E2_782 0.10 +0.6 895,101 - Pf6N2E2_782 0.14 -0.4 895,169 + Pf6N2E2_782 0.18 +0.9 895,170 - Pf6N2E2_782 0.19 +0.1 895,170 - Pf6N2E2_782 0.19 +0.5 895,186 - Pf6N2E2_782 0.20 -0.5 895,186 - Pf6N2E2_782 0.20 +0.1 895,212 - Pf6N2E2_782 0.21 -0.5 895,221 + Pf6N2E2_782 0.22 +0.0 895,221 + Pf6N2E2_782 0.22 +0.4 895,221 + Pf6N2E2_782 0.22 +0.3 895,229 + Pf6N2E2_782 0.22 -0.7 895,229 + Pf6N2E2_782 0.22 -1.1 895,230 - Pf6N2E2_782 0.23 +0.5 895,261 + Pf6N2E2_782 0.25 +0.6 895,262 - Pf6N2E2_782 0.25 +0.7 895,358 + Pf6N2E2_782 0.31 +0.1 895,358 + Pf6N2E2_782 0.31 +1.8 895,359 - Pf6N2E2_782 0.31 -1.1 895,359 - Pf6N2E2_782 0.31 +0.1 895,362 + Pf6N2E2_782 0.31 -0.1 895,362 + Pf6N2E2_782 0.31 -0.1 895,362 + Pf6N2E2_782 0.31 +0.2 895,362 + Pf6N2E2_782 0.31 +0.8 895,363 - Pf6N2E2_782 0.31 +0.7 895,363 - Pf6N2E2_782 0.31 -0.1 895,363 - Pf6N2E2_782 0.31 +0.1 895,363 - Pf6N2E2_782 0.31 +1.2 895,363 - Pf6N2E2_782 0.31 -2.0 895,444 + Pf6N2E2_782 0.37 -0.2 895,445 - Pf6N2E2_782 0.37 -0.3 895,445 - Pf6N2E2_782 0.37 -1.3 895,445 - Pf6N2E2_782 0.37 -0.1 895,451 + Pf6N2E2_782 0.37 +0.1 895,451 + Pf6N2E2_782 0.37 +1.0 895,451 + Pf6N2E2_782 0.37 +0.0 895,452 - Pf6N2E2_782 0.37 +0.4 895,491 + Pf6N2E2_782 0.40 -0.5 895,491 + Pf6N2E2_782 0.40 -1.0 895,547 + Pf6N2E2_782 0.44 +0.3 895,548 - Pf6N2E2_782 0.44 -0.6 895,548 - Pf6N2E2_782 0.44 -0.3 895,548 - Pf6N2E2_782 0.44 +0.1
Or see this region's nucleotide sequence