Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3143

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3142 and Pf6N2E2_3143 are separated by 104 nucleotidesPf6N2E2_3143 and Pf6N2E2_3144 are separated by 132 nucleotides Pf6N2E2_3142 - Threonine synthase (EC 4.2.3.1), at 3,634,653 to 3,636,062 _3142 Pf6N2E2_3143 - Homoserine dehydrogenase (EC 1.1.1.3), at 3,636,167 to 3,637,471 _3143 Pf6N2E2_3144 - Thiol:disulfide interchange protein DsbC, at 3,637,604 to 3,638,335 _3144 Position (kb) 3636 3637 3638Strain fitness (log2 ratio) -3 -2 -1 0 1at 3636.169 kb on - strandat 3637.517 kb on - strandat 3637.879 kb on - strand, within Pf6N2E2_3144at 3637.879 kb on - strand, within Pf6N2E2_3144at 3637.879 kb on - strand, within Pf6N2E2_3144at 3637.931 kb on - strand, within Pf6N2E2_3144at 3637.931 kb on - strand, within Pf6N2E2_3144at 3637.939 kb on - strand, within Pf6N2E2_3144at 3637.999 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.122 kb on - strand, within Pf6N2E2_3144at 3638.143 kb on - strand, within Pf6N2E2_3144at 3638.176 kb on - strand, within Pf6N2E2_3144at 3638.176 kb on - strand, within Pf6N2E2_3144at 3638.430 kb on + strandat 3638.430 kb on + strandat 3638.430 kb on + strandat 3638.430 kb on + strandat 3638.430 kb on + strandat 3638.431 kb on - strandat 3638.431 kb on - strandat 3638.431 kb on - strandat 3638.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,636,169 - +0.3
3,637,517 - -1.0
3,637,879 - Pf6N2E2_3144 0.38 +1.7
3,637,879 - Pf6N2E2_3144 0.38 -0.3
3,637,879 - Pf6N2E2_3144 0.38 +0.6
3,637,931 - Pf6N2E2_3144 0.45 +0.0
3,637,931 - Pf6N2E2_3144 0.45 -1.0
3,637,939 - Pf6N2E2_3144 0.46 -0.5
3,637,999 - Pf6N2E2_3144 0.54 +1.3
3,638,122 - Pf6N2E2_3144 0.71 -0.8
3,638,122 - Pf6N2E2_3144 0.71 +0.5
3,638,122 - Pf6N2E2_3144 0.71 +0.7
3,638,122 - Pf6N2E2_3144 0.71 +0.4
3,638,122 - Pf6N2E2_3144 0.71 +0.6
3,638,122 - Pf6N2E2_3144 0.71 +0.9
3,638,122 - Pf6N2E2_3144 0.71 +0.5
3,638,122 - Pf6N2E2_3144 0.71 -2.8
3,638,122 - Pf6N2E2_3144 0.71 +0.1
3,638,122 - Pf6N2E2_3144 0.71 +0.7
3,638,143 - Pf6N2E2_3144 0.74 +0.2
3,638,176 - Pf6N2E2_3144 0.78 -0.2
3,638,176 - Pf6N2E2_3144 0.78 +0.5
3,638,430 + +0.1
3,638,430 + +0.5
3,638,430 + -0.2
3,638,430 + +0.1
3,638,430 + +0.3
3,638,431 - -0.4
3,638,431 - +0.1
3,638,431 - +0.4
3,638,431 - +0.5

Or see this region's nucleotide sequence