Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2831

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2829 and Pf6N2E2_2830 are separated by 10 nucleotidesPf6N2E2_2830 and Pf6N2E2_2831 are separated by 12 nucleotidesPf6N2E2_2831 and Pf6N2E2_2832 are separated by 152 nucleotides Pf6N2E2_2829 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 3,318,565 to 3,318,957 _2829 Pf6N2E2_2830 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 3,318,968 to 3,319,768 _2830 Pf6N2E2_2831 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 3,319,781 to 3,321,145 _2831 Pf6N2E2_2832 - dicarboxylic acid transporter PcaT, at 3,321,298 to 3,322,596 _2832 Position (kb) 3319 3320 3321 3322Strain fitness (log2 ratio) -2 -1 0 1 2at 3318.919 kb on + strandat 3318.920 kb on - strandat 3318.938 kb on + strandat 3318.938 kb on + strandat 3319.054 kb on - strand, within Pf6N2E2_2830at 3319.065 kb on + strand, within Pf6N2E2_2830at 3319.331 kb on + strand, within Pf6N2E2_2830at 3319.359 kb on - strand, within Pf6N2E2_2830at 3319.431 kb on + strand, within Pf6N2E2_2830at 3319.431 kb on + strand, within Pf6N2E2_2830at 3319.431 kb on + strand, within Pf6N2E2_2830at 3319.507 kb on + strand, within Pf6N2E2_2830at 3319.507 kb on + strand, within Pf6N2E2_2830at 3319.731 kb on + strandat 3319.731 kb on + strandat 3320.706 kb on + strand, within Pf6N2E2_2831at 3320.706 kb on + strand, within Pf6N2E2_2831at 3320.828 kb on + strand, within Pf6N2E2_2831at 3320.828 kb on + strand, within Pf6N2E2_2831at 3320.838 kb on + strand, within Pf6N2E2_2831at 3320.839 kb on - strand, within Pf6N2E2_2831at 3320.839 kb on - strand, within Pf6N2E2_2831at 3320.839 kb on - strand, within Pf6N2E2_2831at 3320.950 kb on - strand, within Pf6N2E2_2831at 3321.108 kb on + strandat 3321.108 kb on + strandat 3321.109 kb on - strandat 3321.109 kb on - strandat 3321.109 kb on - strandat 3321.145 kb on + strandat 3321.145 kb on + strandat 3321.145 kb on + strandat 3321.165 kb on - strandat 3321.165 kb on - strandat 3321.165 kb on - strandat 3321.165 kb on - strandat 3321.165 kb on - strandat 3321.165 kb on - strandat 3321.165 kb on - strandat 3321.165 kb on - strandat 3321.317 kb on + strandat 3321.317 kb on + strandat 3321.380 kb on + strandat 3321.380 kb on + strandat 3321.380 kb on + strandat 3321.380 kb on + strandat 3321.381 kb on - strandat 3321.381 kb on - strandat 3321.381 kb on - strandat 3321.381 kb on - strandat 3321.431 kb on + strand, within Pf6N2E2_2832at 3321.431 kb on + strand, within Pf6N2E2_2832at 3321.431 kb on + strand, within Pf6N2E2_2832at 3321.431 kb on + strand, within Pf6N2E2_2832at 3321.432 kb on - strand, within Pf6N2E2_2832at 3321.432 kb on - strand, within Pf6N2E2_2832at 3321.432 kb on - strand, within Pf6N2E2_2832at 3321.470 kb on + strand, within Pf6N2E2_2832at 3321.471 kb on - strand, within Pf6N2E2_2832at 3321.481 kb on + strand, within Pf6N2E2_2832at 3321.481 kb on + strand, within Pf6N2E2_2832at 3321.481 kb on + strand, within Pf6N2E2_2832at 3321.482 kb on - strand, within Pf6N2E2_2832at 3321.482 kb on - strand, within Pf6N2E2_2832at 3321.482 kb on - strand, within Pf6N2E2_2832at 3321.545 kb on + strand, within Pf6N2E2_2832at 3321.545 kb on + strand, within Pf6N2E2_2832at 3321.545 kb on + strand, within Pf6N2E2_2832at 3321.546 kb on - strand, within Pf6N2E2_2832at 3321.546 kb on - strand, within Pf6N2E2_2832at 3321.546 kb on - strand, within Pf6N2E2_2832at 3321.546 kb on - strand, within Pf6N2E2_2832at 3321.546 kb on - strand, within Pf6N2E2_2832at 3321.546 kb on - strand, within Pf6N2E2_2832at 3321.676 kb on - strand, within Pf6N2E2_2832at 3321.728 kb on + strand, within Pf6N2E2_2832at 3321.728 kb on + strand, within Pf6N2E2_2832at 3321.728 kb on + strand, within Pf6N2E2_2832at 3321.728 kb on + strand, within Pf6N2E2_2832at 3321.728 kb on + strand, within Pf6N2E2_2832at 3321.728 kb on + strand, within Pf6N2E2_2832at 3321.729 kb on - strandat 3321.729 kb on - strand, within Pf6N2E2_2832at 3321.755 kb on + strand, within Pf6N2E2_2832at 3321.755 kb on + strand, within Pf6N2E2_2832at 3321.755 kb on + strand, within Pf6N2E2_2832at 3321.756 kb on - strand, within Pf6N2E2_2832at 3321.756 kb on - strand, within Pf6N2E2_2832at 3321.756 kb on - strand, within Pf6N2E2_2832at 3321.797 kb on + strand, within Pf6N2E2_2832at 3321.797 kb on + strand, within Pf6N2E2_2832at 3321.798 kb on - strand, within Pf6N2E2_2832at 3321.798 kb on - strand, within Pf6N2E2_2832at 3321.798 kb on - strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.809 kb on + strand, within Pf6N2E2_2832at 3321.810 kb on - strand, within Pf6N2E2_2832at 3321.810 kb on - strand, within Pf6N2E2_2832at 3321.810 kb on - strand, within Pf6N2E2_2832at 3321.810 kb on - strand, within Pf6N2E2_2832at 3322.022 kb on + strand, within Pf6N2E2_2832at 3322.023 kb on - strand, within Pf6N2E2_2832at 3322.023 kb on - strand, within Pf6N2E2_2832at 3322.109 kb on + strand, within Pf6N2E2_2832at 3322.109 kb on + strand, within Pf6N2E2_2832

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,318,919 + +0.6
3,318,920 - -1.5
3,318,938 + +0.7
3,318,938 + +0.9
3,319,054 - Pf6N2E2_2830 0.11 -0.4
3,319,065 + Pf6N2E2_2830 0.12 -1.2
3,319,331 + Pf6N2E2_2830 0.45 -0.2
3,319,359 - Pf6N2E2_2830 0.49 +0.6
3,319,431 + Pf6N2E2_2830 0.58 +0.1
3,319,431 + Pf6N2E2_2830 0.58 -0.9
3,319,431 + Pf6N2E2_2830 0.58 -0.6
3,319,507 + Pf6N2E2_2830 0.67 +0.5
3,319,507 + Pf6N2E2_2830 0.67 -0.8
3,319,731 + -0.3
3,319,731 + +0.4
3,320,706 + Pf6N2E2_2831 0.68 -0.1
3,320,706 + Pf6N2E2_2831 0.68 +0.3
3,320,828 + Pf6N2E2_2831 0.77 -0.3
3,320,828 + Pf6N2E2_2831 0.77 +0.5
3,320,838 + Pf6N2E2_2831 0.77 -0.1
3,320,839 - Pf6N2E2_2831 0.78 +1.2
3,320,839 - Pf6N2E2_2831 0.78 +0.2
3,320,839 - Pf6N2E2_2831 0.78 -2.0
3,320,950 - Pf6N2E2_2831 0.86 +0.4
3,321,108 + +0.4
3,321,108 + +0.3
3,321,109 - +1.2
3,321,109 - +0.1
3,321,109 - +0.1
3,321,145 + -1.7
3,321,145 + -1.4
3,321,145 + +0.4
3,321,165 - +0.6
3,321,165 - +0.4
3,321,165 - -0.1
3,321,165 - +0.2
3,321,165 - +1.0
3,321,165 - +0.9
3,321,165 - +0.0
3,321,165 - +0.5
3,321,317 + +0.3
3,321,317 + -0.1
3,321,380 + -0.7
3,321,380 + +0.5
3,321,380 + +0.0
3,321,380 + +0.4
3,321,381 - +0.1
3,321,381 - +0.6
3,321,381 - +0.8
3,321,381 - -0.2
3,321,431 + Pf6N2E2_2832 0.10 +1.0
3,321,431 + Pf6N2E2_2832 0.10 +2.0
3,321,431 + Pf6N2E2_2832 0.10 +1.0
3,321,431 + Pf6N2E2_2832 0.10 +0.1
3,321,432 - Pf6N2E2_2832 0.10 +0.1
3,321,432 - Pf6N2E2_2832 0.10 +0.1
3,321,432 - Pf6N2E2_2832 0.10 -1.1
3,321,470 + Pf6N2E2_2832 0.13 -0.0
3,321,471 - Pf6N2E2_2832 0.13 +0.8
3,321,481 + Pf6N2E2_2832 0.14 -0.3
3,321,481 + Pf6N2E2_2832 0.14 +1.8
3,321,481 + Pf6N2E2_2832 0.14 +0.0
3,321,482 - Pf6N2E2_2832 0.14 -1.0
3,321,482 - Pf6N2E2_2832 0.14 +0.8
3,321,482 - Pf6N2E2_2832 0.14 +0.8
3,321,545 + Pf6N2E2_2832 0.19 +0.3
3,321,545 + Pf6N2E2_2832 0.19 -0.2
3,321,545 + Pf6N2E2_2832 0.19 -1.0
3,321,546 - Pf6N2E2_2832 0.19 -0.0
3,321,546 - Pf6N2E2_2832 0.19 +0.5
3,321,546 - Pf6N2E2_2832 0.19 +0.5
3,321,546 - Pf6N2E2_2832 0.19 -0.1
3,321,546 - Pf6N2E2_2832 0.19 -0.1
3,321,546 - Pf6N2E2_2832 0.19 -0.5
3,321,676 - Pf6N2E2_2832 0.29 -0.2
3,321,728 + Pf6N2E2_2832 0.33 -0.5
3,321,728 + Pf6N2E2_2832 0.33 +0.6
3,321,728 + Pf6N2E2_2832 0.33 +0.4
3,321,728 + Pf6N2E2_2832 0.33 -0.1
3,321,728 + Pf6N2E2_2832 0.33 +0.8
3,321,728 + Pf6N2E2_2832 0.33 +0.5
3,321,729 - +1.0
3,321,729 - Pf6N2E2_2832 0.33 -0.4
3,321,755 + Pf6N2E2_2832 0.35 +0.4
3,321,755 + Pf6N2E2_2832 0.35 -0.2
3,321,755 + Pf6N2E2_2832 0.35 -0.1
3,321,756 - Pf6N2E2_2832 0.35 -0.2
3,321,756 - Pf6N2E2_2832 0.35 -0.2
3,321,756 - Pf6N2E2_2832 0.35 -0.0
3,321,797 + Pf6N2E2_2832 0.38 +0.2
3,321,797 + Pf6N2E2_2832 0.38 +0.4
3,321,798 - Pf6N2E2_2832 0.38 +0.0
3,321,798 - Pf6N2E2_2832 0.38 +0.4
3,321,798 - Pf6N2E2_2832 0.38 +0.2
3,321,809 + Pf6N2E2_2832 0.39 +0.5
3,321,809 + Pf6N2E2_2832 0.39 +0.5
3,321,809 + Pf6N2E2_2832 0.39 -1.1
3,321,809 + Pf6N2E2_2832 0.39 +0.2
3,321,809 + Pf6N2E2_2832 0.39 +0.2
3,321,809 + Pf6N2E2_2832 0.39 +0.0
3,321,809 + Pf6N2E2_2832 0.39 -0.4
3,321,809 + Pf6N2E2_2832 0.39 -0.4
3,321,809 + Pf6N2E2_2832 0.39 -1.6
3,321,809 + Pf6N2E2_2832 0.39 +0.6
3,321,809 + Pf6N2E2_2832 0.39 -0.2
3,321,810 - Pf6N2E2_2832 0.39 -1.2
3,321,810 - Pf6N2E2_2832 0.39 +1.0
3,321,810 - Pf6N2E2_2832 0.39 +0.3
3,321,810 - Pf6N2E2_2832 0.39 -0.7
3,322,022 + Pf6N2E2_2832 0.56 -0.7
3,322,023 - Pf6N2E2_2832 0.56 +0.9
3,322,023 - Pf6N2E2_2832 0.56 -0.3
3,322,109 + Pf6N2E2_2832 0.62 +0.4
3,322,109 + Pf6N2E2_2832 0.62 -0.0

Or see this region's nucleotide sequence