Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2429 and Pf6N2E2_2430 are separated by 17 nucleotides Pf6N2E2_2430 and Pf6N2E2_2431 are separated by 3 nucleotides Pf6N2E2_2431 and Pf6N2E2_2432 are separated by 171 nucleotides Pf6N2E2_2432 and Pf6N2E2_2433 overlap by 1 nucleotides
Pf6N2E2_2429 - Glutathione-regulated potassium-efflux system protein KefB, at 2,877,443 to 2,879,155
_2429
Pf6N2E2_2430 - Ammonium transporter, at 2,879,173 to 2,880,381
_2430
Pf6N2E2_2431 - hypothetical protein, at 2,880,385 to 2,880,549
_2431
Pf6N2E2_2432 - Probable transmembrane protein, at 2,880,721 to 2,881,035
_2432
Pf6N2E2_2433 - Probable transmembrane protein, at 2,881,035 to 2,881,427
_2433
Position (kb)
2879
2880
2881 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2878.224 kb on + strand, within Pf6N2E2_2429 at 2878.224 kb on + strand, within Pf6N2E2_2429 at 2878.224 kb on + strand, within Pf6N2E2_2429 at 2878.224 kb on + strand, within Pf6N2E2_2429 at 2878.225 kb on - strand, within Pf6N2E2_2429 at 2878.225 kb on - strand, within Pf6N2E2_2429 at 2878.225 kb on - strand, within Pf6N2E2_2429 at 2878.225 kb on - strand, within Pf6N2E2_2429 at 2878.225 kb on - strand, within Pf6N2E2_2429 at 2878.225 kb on - strand, within Pf6N2E2_2429 at 2878.371 kb on + strand, within Pf6N2E2_2429 at 2878.536 kb on + strand, within Pf6N2E2_2429 at 2878.536 kb on + strand, within Pf6N2E2_2429 at 2878.536 kb on + strand, within Pf6N2E2_2429 at 2878.537 kb on - strand, within Pf6N2E2_2429 at 2878.753 kb on + strand, within Pf6N2E2_2429 at 2878.923 kb on + strand, within Pf6N2E2_2429 at 2879.126 kb on + strand at 2879.126 kb on + strand at 2879.225 kb on + strand at 2879.225 kb on + strand at 2879.225 kb on + strand at 2879.225 kb on + strand at 2879.225 kb on + strand at 2879.225 kb on + strand at 2879.226 kb on - strand at 2879.226 kb on - strand at 2879.226 kb on - strand at 2879.226 kb on - strand at 2879.226 kb on - strand at 2879.226 kb on - strand at 2879.276 kb on + strand at 2879.276 kb on + strand at 2879.277 kb on - strand at 2879.620 kb on + strand, within Pf6N2E2_2430 at 2879.621 kb on - strand, within Pf6N2E2_2430 at 2879.979 kb on - strand, within Pf6N2E2_2430 at 2880.108 kb on + strand, within Pf6N2E2_2430 at 2880.108 kb on + strand, within Pf6N2E2_2430 at 2880.162 kb on - strand, within Pf6N2E2_2430 at 2880.162 kb on - strand, within Pf6N2E2_2430 at 2880.178 kb on + strand, within Pf6N2E2_2430 at 2880.178 kb on + strand, within Pf6N2E2_2430 at 2880.178 kb on + strand, within Pf6N2E2_2430 at 2880.178 kb on + strand, within Pf6N2E2_2430 at 2880.178 kb on + strand, within Pf6N2E2_2430 at 2880.178 kb on + strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.179 kb on - strand, within Pf6N2E2_2430 at 2880.180 kb on + strand, within Pf6N2E2_2430 at 2880.189 kb on - strand, within Pf6N2E2_2430 at 2880.306 kb on + strand at 2880.306 kb on + strand at 2880.306 kb on + strand at 2880.307 kb on - strand at 2880.307 kb on - strand at 2880.384 kb on + strand at 2880.472 kb on - strand, within Pf6N2E2_2431 at 2880.552 kb on - strand at 2880.560 kb on + strand at 2880.617 kb on + strand at 2880.617 kb on + strand at 2880.617 kb on + strand at 2880.617 kb on + strand at 2880.617 kb on + strand at 2880.617 kb on + strand at 2880.618 kb on - strand at 2880.618 kb on - strand at 2880.618 kb on - strand at 2880.658 kb on + strand at 2880.658 kb on + strand at 2880.658 kb on + strand at 2880.658 kb on + strand at 2880.659 kb on - strand at 2880.682 kb on + strand at 2880.706 kb on + strand at 2880.952 kb on + strand, within Pf6N2E2_2432 at 2880.952 kb on + strand, within Pf6N2E2_2432 at 2880.952 kb on + strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.953 kb on - strand, within Pf6N2E2_2432 at 2880.956 kb on + strand, within Pf6N2E2_2432 at 2880.956 kb on + strand, within Pf6N2E2_2432 at 2880.956 kb on + strand, within Pf6N2E2_2432 at 2880.956 kb on + strand, within Pf6N2E2_2432 at 2880.956 kb on + strand, within Pf6N2E2_2432 at 2880.956 kb on + strand, within Pf6N2E2_2432 at 2880.956 kb on + strand, within Pf6N2E2_2432 at 2880.957 kb on - strand, within Pf6N2E2_2432 at 2880.957 kb on - strand, within Pf6N2E2_2432 at 2880.957 kb on - strand, within Pf6N2E2_2432 at 2880.957 kb on - strand, within Pf6N2E2_2432 at 2881.272 kb on + strand, within Pf6N2E2_2433 at 2881.272 kb on + strand, within Pf6N2E2_2433 at 2881.272 kb on + strand, within Pf6N2E2_2433 at 2881.273 kb on - strand, within Pf6N2E2_2433 at 2881.273 kb on - strand, within Pf6N2E2_2433 at 2881.273 kb on - strand, within Pf6N2E2_2433 at 2881.273 kb on - strand, within Pf6N2E2_2433 at 2881.308 kb on + strand, within Pf6N2E2_2433 at 2881.308 kb on + strand, within Pf6N2E2_2433 at 2881.308 kb on + strand, within Pf6N2E2_2433 at 2881.357 kb on - strand, within Pf6N2E2_2433 at 2881.357 kb on - strand, within Pf6N2E2_2433
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,878,224 + Pf6N2E2_2429 0.46 +0.0 2,878,224 + Pf6N2E2_2429 0.46 +0.3 2,878,224 + Pf6N2E2_2429 0.46 -0.7 2,878,224 + Pf6N2E2_2429 0.46 +0.5 2,878,225 - Pf6N2E2_2429 0.46 +0.2 2,878,225 - Pf6N2E2_2429 0.46 -1.5 2,878,225 - Pf6N2E2_2429 0.46 -1.1 2,878,225 - Pf6N2E2_2429 0.46 +0.4 2,878,225 - Pf6N2E2_2429 0.46 -1.1 2,878,225 - Pf6N2E2_2429 0.46 +0.3 2,878,371 + Pf6N2E2_2429 0.54 -0.6 2,878,536 + Pf6N2E2_2429 0.64 +0.3 2,878,536 + Pf6N2E2_2429 0.64 +1.0 2,878,536 + Pf6N2E2_2429 0.64 -0.7 2,878,537 - Pf6N2E2_2429 0.64 -0.3 2,878,753 + Pf6N2E2_2429 0.76 -0.7 2,878,923 + Pf6N2E2_2429 0.86 -0.1 2,879,126 + -0.4 2,879,126 + -0.0 2,879,225 + -0.2 2,879,225 + +0.5 2,879,225 + +1.0 2,879,225 + -1.6 2,879,225 + +0.5 2,879,225 + +0.4 2,879,226 - +0.2 2,879,226 - +0.4 2,879,226 - +0.4 2,879,226 - +0.2 2,879,226 - -0.2 2,879,226 - -0.3 2,879,276 + +0.8 2,879,276 + +0.3 2,879,277 - +0.2 2,879,620 + Pf6N2E2_2430 0.37 +2.4 2,879,621 - Pf6N2E2_2430 0.37 +0.9 2,879,979 - Pf6N2E2_2430 0.67 +0.8 2,880,108 + Pf6N2E2_2430 0.77 -0.6 2,880,108 + Pf6N2E2_2430 0.77 +0.6 2,880,162 - Pf6N2E2_2430 0.82 +0.0 2,880,162 - Pf6N2E2_2430 0.82 +0.5 2,880,178 + Pf6N2E2_2430 0.83 +0.3 2,880,178 + Pf6N2E2_2430 0.83 -0.7 2,880,178 + Pf6N2E2_2430 0.83 -0.1 2,880,178 + Pf6N2E2_2430 0.83 -0.1 2,880,178 + Pf6N2E2_2430 0.83 +0.3 2,880,178 + Pf6N2E2_2430 0.83 +0.8 2,880,179 - Pf6N2E2_2430 0.83 -0.1 2,880,179 - Pf6N2E2_2430 0.83 +0.5 2,880,179 - Pf6N2E2_2430 0.83 +0.1 2,880,179 - Pf6N2E2_2430 0.83 +0.0 2,880,179 - Pf6N2E2_2430 0.83 +0.5 2,880,179 - Pf6N2E2_2430 0.83 +0.3 2,880,179 - Pf6N2E2_2430 0.83 +0.3 2,880,179 - Pf6N2E2_2430 0.83 -0.7 2,880,180 + Pf6N2E2_2430 0.83 -1.3 2,880,189 - Pf6N2E2_2430 0.84 +0.8 2,880,306 + +0.4 2,880,306 + -0.0 2,880,306 + -0.6 2,880,307 - +1.1 2,880,307 - +0.8 2,880,384 + +0.9 2,880,472 - Pf6N2E2_2431 0.53 +1.5 2,880,552 - -0.8 2,880,560 + +1.7 2,880,617 + +0.5 2,880,617 + -0.9 2,880,617 + +1.1 2,880,617 + -1.8 2,880,617 + +0.6 2,880,617 + -0.3 2,880,618 - +0.4 2,880,618 - -1.1 2,880,618 - +1.1 2,880,658 + -0.1 2,880,658 + +1.2 2,880,658 + +0.1 2,880,658 + -1.3 2,880,659 - +0.1 2,880,682 + -0.3 2,880,706 + -0.0 2,880,952 + Pf6N2E2_2432 0.73 +0.3 2,880,952 + Pf6N2E2_2432 0.73 +0.6 2,880,952 + Pf6N2E2_2432 0.73 +0.3 2,880,953 - Pf6N2E2_2432 0.74 +1.2 2,880,953 - Pf6N2E2_2432 0.74 -0.1 2,880,953 - Pf6N2E2_2432 0.74 +0.5 2,880,953 - Pf6N2E2_2432 0.74 -0.4 2,880,953 - Pf6N2E2_2432 0.74 +1.4 2,880,953 - Pf6N2E2_2432 0.74 -0.1 2,880,953 - Pf6N2E2_2432 0.74 +0.5 2,880,953 - Pf6N2E2_2432 0.74 +1.1 2,880,953 - Pf6N2E2_2432 0.74 -0.3 2,880,953 - Pf6N2E2_2432 0.74 -0.1 2,880,956 + Pf6N2E2_2432 0.75 +0.0 2,880,956 + Pf6N2E2_2432 0.75 +0.3 2,880,956 + Pf6N2E2_2432 0.75 +0.1 2,880,956 + Pf6N2E2_2432 0.75 +0.6 2,880,956 + Pf6N2E2_2432 0.75 +0.2 2,880,956 + Pf6N2E2_2432 0.75 +0.3 2,880,956 + Pf6N2E2_2432 0.75 +0.2 2,880,957 - Pf6N2E2_2432 0.75 +0.5 2,880,957 - Pf6N2E2_2432 0.75 -0.9 2,880,957 - Pf6N2E2_2432 0.75 -0.1 2,880,957 - Pf6N2E2_2432 0.75 -0.3 2,881,272 + Pf6N2E2_2433 0.60 +0.6 2,881,272 + Pf6N2E2_2433 0.60 +0.8 2,881,272 + Pf6N2E2_2433 0.60 +0.2 2,881,273 - Pf6N2E2_2433 0.61 +1.7 2,881,273 - Pf6N2E2_2433 0.61 -0.5 2,881,273 - Pf6N2E2_2433 0.61 +0.3 2,881,273 - Pf6N2E2_2433 0.61 +0.0 2,881,308 + Pf6N2E2_2433 0.69 +0.6 2,881,308 + Pf6N2E2_2433 0.69 +0.7 2,881,308 + Pf6N2E2_2433 0.69 -0.3 2,881,357 - Pf6N2E2_2433 0.82 +0.1 2,881,357 - Pf6N2E2_2433 0.82 -1.1
Or see this region's nucleotide sequence