Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1378 and Pf6N2E2_1379 are separated by 192 nucleotides Pf6N2E2_1379 and Pf6N2E2_1380 overlap by 17 nucleotides
Pf6N2E2_1378 - hypothetical protein, at 1,616,196 to 1,617,383
_1378
Pf6N2E2_1379 - Sensory box histidine kinase/response regulator, at 1,617,576 to 1,618,946
_1379
Pf6N2E2_1380 - Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10), at 1,618,930 to 1,620,108
_1380
Position (kb)
1617
1618
1619 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1616.764 kb on + strand, within Pf6N2E2_1378 at 1616.764 kb on + strand, within Pf6N2E2_1378 at 1616.765 kb on - strand, within Pf6N2E2_1378 at 1616.765 kb on - strand, within Pf6N2E2_1378 at 1617.115 kb on + strand, within Pf6N2E2_1378 at 1617.115 kb on + strand, within Pf6N2E2_1378 at 1617.116 kb on - strand, within Pf6N2E2_1378 at 1617.116 kb on - strand, within Pf6N2E2_1378 at 1617.168 kb on - strand, within Pf6N2E2_1378 at 1617.187 kb on + strand, within Pf6N2E2_1378 at 1617.351 kb on + strand at 1617.351 kb on + strand at 1617.393 kb on + strand at 1617.393 kb on + strand at 1617.394 kb on - strand at 1617.394 kb on - strand at 1618.083 kb on - strand, within Pf6N2E2_1379 at 1618.256 kb on + strand, within Pf6N2E2_1379 at 1618.273 kb on + strand, within Pf6N2E2_1379 at 1618.274 kb on - strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.564 kb on - strand, within Pf6N2E2_1379 at 1618.645 kb on + strand, within Pf6N2E2_1379 at 1618.645 kb on + strand, within Pf6N2E2_1379 at 1619.205 kb on - strand, within Pf6N2E2_1380 at 1619.205 kb on - strand, within Pf6N2E2_1380
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 1,616,764 + Pf6N2E2_1378 0.48 -0.3 1,616,764 + Pf6N2E2_1378 0.48 +0.4 1,616,765 - Pf6N2E2_1378 0.48 +0.5 1,616,765 - Pf6N2E2_1378 0.48 +2.6 1,617,115 + Pf6N2E2_1378 0.77 -1.2 1,617,115 + Pf6N2E2_1378 0.77 +0.5 1,617,116 - Pf6N2E2_1378 0.77 -0.9 1,617,116 - Pf6N2E2_1378 0.77 -0.4 1,617,168 - Pf6N2E2_1378 0.82 -0.0 1,617,187 + Pf6N2E2_1378 0.83 +0.1 1,617,351 + -1.0 1,617,351 + +0.7 1,617,393 + +0.4 1,617,393 + +0.3 1,617,394 - -0.5 1,617,394 - +1.4 1,618,083 - Pf6N2E2_1379 0.37 -1.7 1,618,256 + Pf6N2E2_1379 0.50 -1.5 1,618,273 + Pf6N2E2_1379 0.51 -1.5 1,618,274 - Pf6N2E2_1379 0.51 -0.5 1,618,563 + Pf6N2E2_1379 0.72 +0.1 1,618,563 + Pf6N2E2_1379 0.72 -1.4 1,618,563 + Pf6N2E2_1379 0.72 -0.3 1,618,563 + Pf6N2E2_1379 0.72 -1.0 1,618,564 - Pf6N2E2_1379 0.72 -0.8 1,618,645 + Pf6N2E2_1379 0.78 -1.5 1,618,645 + Pf6N2E2_1379 0.78 -1.7 1,619,205 - Pf6N2E2_1380 0.23 -1.0 1,619,205 - Pf6N2E2_1380 0.23 -1.9
Or see this region's nucleotide sequence