Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08985

Experiment: R2A with Other_metal_mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Other_metal_mix 1 X
1,955,783	+		LRK54_RS08980	0.47	-0.2
1,955,808	-		LRK54_RS08980	0.49	-1.3
1,955,808	-		LRK54_RS08980	0.49	-0.3
1,955,837	+		LRK54_RS08980	0.50	+0.5
1,955,838	-		LRK54_RS08980	0.51	-0.1
1,955,847	+		LRK54_RS08980	0.51	-0.5
1,955,848	-		LRK54_RS08980	0.51	-2.6
1,955,848	-		LRK54_RS08980	0.51	-0.2
1,955,848	-		LRK54_RS08980	0.51	+0.3
1,955,848	-		LRK54_RS08980	0.51	-0.4
1,955,925	+		LRK54_RS08980	0.56	+0.4
1,955,925	+		LRK54_RS08980	0.56	+0.4
1,955,966	+		LRK54_RS08980	0.58	-1.6
1,955,967	-		LRK54_RS08980	0.58	-0.0
1,955,990	+		LRK54_RS08980	0.60	-0.6
1,955,990	+		LRK54_RS08980	0.60	-1.0
1,955,991	-		LRK54_RS08980	0.60	-0.1
1,955,991	-		LRK54_RS08980	0.60	+0.0
1,956,012	+		LRK54_RS08980	0.61	-1.0
1,956,012	+		LRK54_RS08980	0.61	-1.8
1,956,012	+		LRK54_RS08980	0.61	-0.4
1,956,013	-		LRK54_RS08980	0.61	+0.2
1,956,081	+		LRK54_RS08980	0.65	-0.8
1,956,106	+		LRK54_RS08980	0.67	-0.6
1,956,106	+		LRK54_RS08980	0.67	+0.8
1,956,107	-		LRK54_RS08980	0.67	-1.1
1,956,222	+		LRK54_RS08980	0.74	-0.2
1,956,222	+		LRK54_RS08980	0.74	+0.1
1,956,222	+		LRK54_RS08980	0.74	+0.6
1,956,222	+		LRK54_RS08980	0.74	+0.2
1,956,222	+		LRK54_RS08980	0.74	-0.5
1,956,222	+		LRK54_RS08980	0.74	+0.1
1,956,222	+		LRK54_RS08980	0.74	+0.8
1,956,223	-		LRK54_RS08980	0.74	-0.3
1,956,223	-		LRK54_RS08980	0.74	-0.3
1,956,223	-		LRK54_RS08980	0.74	-0.4
1,956,223	-		LRK54_RS08980	0.74	-0.4
1,956,223	-		LRK54_RS08980	0.74	-0.1
1,956,223	-		LRK54_RS08980	0.74	-1.1
1,956,223	-		LRK54_RS08980	0.74	-0.6
1,956,252	+		LRK54_RS08980	0.76	+0.1
1,956,252	+		LRK54_RS08980	0.76	-1.7
1,956,252	+		LRK54_RS08980	0.76	+1.1
1,956,253	-		LRK54_RS08980	0.76	-1.0
1,956,253	-		LRK54_RS08980	0.76	-2.0
1,956,253	-		LRK54_RS08980	0.76	+0.9
1,956,266	+		LRK54_RS08980	0.77	-0.4
1,956,266	+		LRK54_RS08980	0.77	-0.0
1,956,266	+		LRK54_RS08980	0.77	+1.1
1,956,266	+		LRK54_RS08980	0.77	-1.8
1,956,267	-		LRK54_RS08980	0.77	+1.0
1,956,453	+		LRK54_RS08980	0.88	-0.1
1,956,453	+		LRK54_RS08980	0.88	+0.6
1,956,453	+		LRK54_RS08980	0.88	+0.0
1,956,453	+		LRK54_RS08980	0.88	-1.4
1,956,453	+		LRK54_RS08980	0.88	+0.1
1,956,454	-		LRK54_RS08980	0.88	-0.3
1,956,454	-		LRK54_RS08980	0.88	-0.1
1,956,534	+				-0.3
1,956,534	+				-2.2
1,956,534	+				-0.1
1,956,534	+				-0.1
1,956,534	+				+0.9
1,956,534	+				+0.3
1,956,534	+				-0.6
1,956,534	+				-0.8
1,956,534	+				+0.1
1,956,534	+				+0.6
1,956,534	+				-0.0
1,956,535	-				-0.0
1,956,535	-				-1.2
1,956,646	+				-0.3
1,956,646	+				+0.2
1,956,646	+				-0.2
1,956,646	+				-0.8
1,956,646	+				-0.6
1,956,646	+				+0.7
1,956,646	+				-0.4
1,956,646	+				-0.7
1,956,646	+				-0.1
1,956,646	+				-2.2
1,956,646	+				-1.0
1,956,646	+				-1.2
1,956,646	+				+1.7
1,956,647	-				-1.1
1,956,647	-				-1.6
1,956,647	-				-0.7
1,956,647	-				-0.9
1,956,647	-				-0.9
1,956,659	+				-0.6
1,956,659	+				-0.3
1,956,660	-				+0.6
1,956,697	-				-0.0
1,956,854	+		LRK54_RS08985	0.13	+0.3
1,956,932	+		LRK54_RS08985	0.21	+1.4
1,956,932	+		LRK54_RS08985	0.21	-0.7
1,956,933	-		LRK54_RS08985	0.21	-1.9
1,956,933	-		LRK54_RS08985	0.21	-0.1
1,956,968	+		LRK54_RS08985	0.25	-0.1
1,956,968	+		LRK54_RS08985	0.25	+0.6
1,956,968	+		LRK54_RS08985	0.25	-0.5
1,956,969	-		LRK54_RS08985	0.25	-0.1
1,957,109	+		LRK54_RS08985	0.39	+1.4
1,957,110	-		LRK54_RS08985	0.39	-1.6
1,957,110	-		LRK54_RS08985	0.39	-1.6
1,957,110	-		LRK54_RS08985	0.39	-0.6
1,957,110	-		LRK54_RS08985	0.39	+1.0
1,957,117	+		LRK54_RS08985	0.40	+0.1
1,957,147	+		LRK54_RS08985	0.43	-1.7
1,957,148	-		LRK54_RS08985	0.43	-2.6
1,957,247	+		LRK54_RS08985	0.53	-0.6
1,957,247	+		LRK54_RS08985	0.53	+0.4
1,957,248	-		LRK54_RS08985	0.53	-1.3
1,957,248	-		LRK54_RS08985	0.53	+0.9
1,957,248	-		LRK54_RS08985	0.53	-0.4
1,957,344	+		LRK54_RS08985	0.63	-0.1
1,957,344	+		LRK54_RS08985	0.63	-1.3
1,957,344	+		LRK54_RS08985	0.63	-0.1
1,957,345	-		LRK54_RS08985	0.63	-0.5
1,957,345	-		LRK54_RS08985	0.63	-0.7
1,957,379	+		LRK54_RS08985	0.67	+0.8
1,957,379	+		LRK54_RS08985	0.67	+0.1
1,957,379	+		LRK54_RS08985	0.67	+0.3
1,957,379	+		LRK54_RS08985	0.67	-0.7
1,957,379	+		LRK54_RS08985	0.67	+1.0
1,957,380	-		LRK54_RS08985	0.67	+0.6
1,957,394	+		LRK54_RS08985	0.68	-1.0
1,957,439	+		LRK54_RS08985	0.73	-1.5
1,957,439	+		LRK54_RS08985	0.73	-0.1
1,957,439	+		LRK54_RS08985	0.73	+1.3
1,957,439	+		LRK54_RS08985	0.73	-0.5
1,957,439	+		LRK54_RS08985	0.73	-0.5
1,957,440	-		LRK54_RS08985	0.73	-0.4
1,957,440	-		LRK54_RS08985	0.73	-2.3
1,957,440	-		LRK54_RS08985	0.73	+0.1
1,957,440	-		LRK54_RS08985	0.73	-0.6
1,957,440	-		LRK54_RS08985	0.73	-0.1
1,957,440	-		LRK54_RS08985	0.73	-0.5
1,957,542	+		LRK54_RS08985	0.83	-1.0
1,957,542	+		LRK54_RS08985	0.83	-1.4
1,957,542	+		LRK54_RS08985	0.83	+0.4
1,957,542	+		LRK54_RS08985	0.83	+0.7
1,957,542	+		LRK54_RS08985	0.83	+1.1
1,957,542	+		LRK54_RS08985	0.83	+0.2
1,957,543	-		LRK54_RS08985	0.83	+0.4
1,957,543	-		LRK54_RS08985	0.83	+0.1
1,957,543	-		LRK54_RS08985	0.83	+0.6
1,957,543	-		LRK54_RS08985	0.83	-1.0
1,957,543	-		LRK54_RS08985	0.83	+0.0
1,957,605	+		LRK54_RS08985	0.90	-0.2
1,957,605	+		LRK54_RS08985	0.90	-1.1
1,957,605	+		LRK54_RS08985	0.90	-0.1
1,957,606	-		LRK54_RS08985	0.90	-0.6
1,957,606	-		LRK54_RS08985	0.90	-1.2
1,957,606	-		LRK54_RS08985	0.90	-0.6
1,957,606	-		LRK54_RS08985	0.90	+0.1
1,957,626	+				-0.1
1,957,627	-				+1.1
1,957,778	+				-0.4
1,957,778	+				-0.6
1,957,778	+				+0.6
1,957,778	+				+0.6
1,957,779	-				+1.7
1,957,779	-				+0.2
1,957,782	+				-0.6
1,957,783	-				-0.7
1,957,895	+				-0.9
1,957,896	-				+0.3
1,957,896	-				-0.3
1,957,927	+				-0.0
1,957,928	-				-1.0
1,957,932	+				+1.4
1,957,971	+				-0.9
1,957,971	+				-0.2
1,957,972	-				-1.5
1,957,972	-				-0.3
1,957,972	-				-0.7
1,957,972	-				-2.3
1,958,094	+		LRK54_RS08990	0.40	+0.9
1,958,095	-		LRK54_RS08990	0.40	-0.8
1,958,095	-		LRK54_RS08990	0.40	+0.2
1,958,137	+		LRK54_RS08990	0.50	-0.0
1,958,138	-		LRK54_RS08990	0.51	-0.0
1,958,138	-		LRK54_RS08990	0.51	-1.6
1,958,138	-		LRK54_RS08990	0.51	+1.1
1,958,138	-		LRK54_RS08990	0.51	-0.3
1,958,138	-		LRK54_RS08990	0.51	-0.4
1,958,177	+		LRK54_RS08990	0.60	-0.6
1,958,177	+		LRK54_RS08990	0.60	+0.4
1,958,223	+		LRK54_RS08990	0.72	-3.0
1,958,223	+		LRK54_RS08990	0.72	-0.6
1,958,223	+		LRK54_RS08990	0.72	-0.7
1,958,224	-		LRK54_RS08990	0.72	+1.3
1,958,224	-		LRK54_RS08990	0.72	-1.2
1,958,224	-		LRK54_RS08990	0.72	+0.8
1,958,250	+		LRK54_RS08990	0.79	-1.1
1,958,250	+		LRK54_RS08990	0.79	-0.7
1,958,251	-		LRK54_RS08990	0.79	+0.9
1,958,251	-		LRK54_RS08990	0.79	-0.1
1,958,251	-		LRK54_RS08990	0.79	-1.7
1,958,330	-				-0.5
1,958,330	-				-0.7
1,958,330	-				-1.4
1,958,330	-				-1.5
1,958,407	+				-1.6
1,958,407	+				+0.3
1,958,431	+				+0.2
1,958,431	+				+0.7
1,958,431	+				-0.2
1,958,431	+				+1.0
1,958,431	+				+0.2
1,958,431	+				-2.1
1,958,432	-				-1.0
1,958,432	-				-1.1
1,958,471	+				+0.4
1,958,685	+		LRK54_RS08995	0.22	-1.3
1,958,685	+		LRK54_RS08995	0.22	+0.2
1,958,685	+		LRK54_RS08995	0.22	-0.6
1,958,686	-		LRK54_RS08995	0.22	+0.5
1,958,686	-		LRK54_RS08995	0.22	-0.6
1,958,686	-		LRK54_RS08995	0.22	-0.4