Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07445

Experiment: R2A with Other_metal_mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Other_metal_mix 1 X
1,604,335	+		LRK54_RS07440	0.24	-0.3
1,604,335	+		LRK54_RS07440	0.24	-0.3
1,604,335	+		LRK54_RS07440	0.24	-0.3
1,604,335	+		LRK54_RS07440	0.24	+1.0
1,604,335	+		LRK54_RS07440	0.24	-0.2
1,604,335	+		LRK54_RS07440	0.24	-1.4
1,604,335	+		LRK54_RS07440	0.24	+0.6
1,604,335	+		LRK54_RS07440	0.24	+0.3
1,604,335	+		LRK54_RS07440	0.24	+0.1
1,604,335	+		LRK54_RS07440	0.24	-0.0
1,604,335	+		LRK54_RS07440	0.24	+0.3
1,604,335	+		LRK54_RS07440	0.24	-1.6
1,604,336	-		LRK54_RS07440	0.24	-0.0
1,604,336	-		LRK54_RS07440	0.24	-0.4
1,604,336	-		LRK54_RS07440	0.24	+1.1
1,604,336	-		LRK54_RS07440	0.24	-1.4
1,604,336	-		LRK54_RS07440	0.24	-0.3
1,604,336	-		LRK54_RS07440	0.24	-1.4
1,604,336	-		LRK54_RS07440	0.24	-0.4
1,604,336	-		LRK54_RS07440	0.24	-0.8
1,604,336	-		LRK54_RS07440	0.24	+0.7
1,604,336	-		LRK54_RS07440	0.24	-0.1
1,604,336	-		LRK54_RS07440	0.24	-0.1
1,604,336	-		LRK54_RS07440	0.24	-0.2
1,604,336	-		LRK54_RS07440	0.24	+1.0
1,604,338	+		LRK54_RS07440	0.24	+0.4
1,604,338	+		LRK54_RS07440	0.24	+1.3
1,604,338	+		LRK54_RS07440	0.24	-0.2
1,604,338	+		LRK54_RS07440	0.24	-1.2
1,604,338	+		LRK54_RS07440	0.24	+0.4
1,604,338	+		LRK54_RS07440	0.24	-1.4
1,604,338	+		LRK54_RS07440	0.24	+0.8
1,604,338	+		LRK54_RS07440	0.24	-2.4
1,604,339	-		LRK54_RS07440	0.25	-0.5
1,604,339	-		LRK54_RS07440	0.25	-2.3
1,604,339	-		LRK54_RS07440	0.25	-0.1
1,604,339	-		LRK54_RS07440	0.25	+0.7
1,604,339	-		LRK54_RS07440	0.25	-1.1
1,604,339	-		LRK54_RS07440	0.25	+0.3
1,604,339	-		LRK54_RS07440	0.25	+1.3
1,604,512	-		LRK54_RS07440	0.64	+0.4
1,604,512	-		LRK54_RS07440	0.64	-0.1
1,604,563	+		LRK54_RS07440	0.76	-1.5
1,604,563	+		LRK54_RS07440	0.76	+0.3
1,604,563	+		LRK54_RS07440	0.76	-0.3
1,604,563	+		LRK54_RS07440	0.76	+0.9
1,604,563	+		LRK54_RS07440	0.76	+0.2
1,604,564	-		LRK54_RS07440	0.76	-0.6
1,604,564	-		LRK54_RS07440	0.76	-0.8
1,604,564	-		LRK54_RS07440	0.76	-1.3
1,604,564	-		LRK54_RS07440	0.76	-1.1
1,604,564	-		LRK54_RS07440	0.76	-0.6
1,604,564	-		LRK54_RS07440	0.76	+0.3
1,604,564	-		LRK54_RS07440	0.76	+0.5
1,604,699	+				+0.2
1,604,699	+				-0.2
1,604,699	+				+0.6
1,604,699	+				-0.8
1,604,699	+				-2.0
1,604,699	+				-1.3
1,604,699	+				-0.6
1,604,699	+				-0.5
1,604,699	+				+0.5
1,604,699	+				-0.5
1,604,699	+				-0.1
1,604,699	+				-2.1
1,604,699	+				+0.1
1,604,699	+				+0.9
1,604,699	+				+1.1
1,604,699	+				-0.2
1,604,699	+				+0.6
1,604,699	+				+0.7
1,604,699	+				-0.1
1,604,699	+				-0.3
1,604,699	+				-1.5
1,604,699	+				-0.6
1,604,699	+				-1.9
1,604,699	+				-0.4
1,604,699	+				+0.7
1,604,699	+				-1.8
1,604,699	+				+0.3
1,604,699	+				+0.2
1,604,699	+				+0.0
1,604,699	+				-1.0
1,604,699	+				-0.1
1,604,699	+				+0.9
1,604,699	+				-0.3
1,604,699	+				-1.0
1,604,699	+				+0.2
1,604,700	-				-1.7
1,604,700	-				-0.5
1,604,700	-				-0.7
1,604,700	-				-0.1
1,604,700	-				-0.6
1,604,700	-				-1.3
1,604,700	-				-0.1
1,604,700	-				+0.0
1,604,700	-				-1.0
1,604,700	-				-0.8
1,604,700	-				-1.8
1,604,700	-				-0.2
1,604,700	-				+0.3
1,604,700	-				-1.0
1,604,700	-				-0.2
1,604,700	-				-0.1
1,604,700	-				+0.0
1,604,700	-				+0.4
1,604,700	-				-0.4
1,604,700	-				-0.5
1,604,700	-				+1.2
1,604,700	-				-0.5
1,604,700	-				-1.3
1,604,700	-				-1.0
1,604,700	-				-0.6
1,604,700	-				+0.0
1,604,700	-				-0.0
1,604,700	-				+1.3
1,604,700	-				-1.2
1,604,700	-				+0.3
1,604,700	-				+0.1
1,604,700	-				-1.8
1,604,700	-				+0.2
1,604,700	-				-0.8
1,604,700	-				-2.1
1,604,700	-				-1.3
1,604,700	-				-0.5
1,604,700	-				-1.3
1,604,700	-				+0.2
1,604,700	-				+0.7
1,604,700	-				-0.8
1,604,700	-				+0.1
1,604,700	-				-0.9
1,604,703	+				-0.5
1,604,703	+				-0.4
1,604,703	+				+0.8
1,604,703	+				+1.1
1,604,703	+				-0.1
1,604,703	+				+0.4
1,604,703	+				-0.8
1,604,703	+				+0.3
1,604,703	+				-0.0
1,604,703	+				+1.6
1,604,703	+				-0.5
1,604,704	-				-0.8
1,604,704	-				-2.0
1,604,704	-				+0.2
1,604,704	-				-0.1
1,604,704	-				-0.1
1,604,704	-				-0.7
1,604,704	-				+0.6
1,604,704	-				-2.3
1,604,722	+				-0.4
1,604,723	-				-0.1
1,604,723	-				-0.5
1,604,723	-				-0.3
1,604,730	+				-0.6
1,604,730	+				-0.0
1,604,731	-				-0.8
1,604,731	-				-0.0
1,604,766	+				-0.5
1,604,766	+				-0.0
1,604,766	+				+0.1
1,604,766	+				-0.5
1,604,766	+				-1.6
1,604,767	-				-0.1
1,604,767	-				+1.7
1,604,767	-				-0.2
1,604,767	-				-0.6
1,604,767	-				+2.3
1,604,767	-				-0.3
1,604,767	-				+0.4
1,604,790	+				-2.1
1,604,790	+				-1.4
1,604,790	+				-0.4
1,604,790	+				-0.8
1,604,790	+				-0.2
1,604,790	+				-0.7
1,604,790	+				-0.3
1,604,790	+				-0.6
1,604,790	+				-0.5
1,604,790	+				+1.0
1,604,790	+				-1.5
1,604,790	+				-0.1
1,604,790	+				-0.3
1,604,790	+				-0.8
1,604,790	+				-0.8
1,604,790	+				+0.3
1,604,790	+				+0.5
1,604,791	-				-0.8
1,604,791	-				-0.3
1,604,791	-				-0.3
1,604,791	-				+0.1
1,604,791	-				-0.0
1,604,791	-				+0.1
1,604,791	-				-0.2
1,604,791	-				-0.4
1,604,791	-				+0.2
1,604,791	-				+0.4
1,604,791	-				+0.6
1,604,791	-				-1.8
1,604,791	-				+0.3
1,604,791	-				+1.0
1,604,791	-				-1.2
1,604,791	-				-0.0
1,604,791	-				-1.1
1,604,791	-				-1.7
1,604,829	+				-0.3
1,604,829	+				+0.5
1,604,829	+				-0.5
1,604,829	+				-0.9
1,604,829	+				-0.5
1,604,829	+				+2.0
1,604,829	+				+0.7
1,604,829	+				-0.1
1,604,829	+				+0.3
1,604,829	+				-0.3
1,604,829	+				-0.8
1,604,829	+				-0.3
1,604,830	-				+1.2
1,604,830	-				+0.4
1,604,830	-				-0.1
1,604,830	-				-0.1
1,604,849	+				-1.2
1,604,849	+				+1.5
1,604,849	+				-0.3
1,604,850	-				+1.0
1,604,850	-				-0.3
1,604,850	-				+0.3
1,604,896	+				+1.1
1,604,896	+				-1.8
1,604,896	+				-0.5
1,604,896	+				-0.4
1,604,896	+				+0.2
1,604,896	+				+1.2
1,604,896	+				-0.2
1,604,896	+				-0.6
1,604,897	-				+1.0
1,604,897	-				-1.0
1,604,897	-				-1.7
1,604,897	-				-0.7
1,604,902	+				-0.8
1,604,902	+				+0.9
1,604,902	+				-0.2
1,604,902	+				-0.2
1,604,902	+				-1.2
1,604,902	+				+0.3
1,604,902	+				-1.2
1,604,903	-				-1.0
1,604,903	-				-1.5
1,604,903	-				+0.1
1,604,903	-				-0.6
1,604,903	-				-0.1
1,604,903	-				+0.3
1,604,903	-				-0.1
1,604,938	+				+0.7
1,604,938	+				-0.1
1,604,939	-				+1.2
1,604,939	-				-1.3
1,605,086	+				-0.6
1,605,086	+				+1.0
1,605,086	+				+1.2
1,605,086	+				-0.4
1,605,086	+				-0.2
1,605,087	-				-0.3
1,605,087	-				-0.0
1,605,087	-				+0.2
1,605,087	-				-0.0
1,605,087	-				+1.3
1,605,087	-				+0.4
1,605,087	-				-0.5
1,605,087	-				-0.5
1,605,229	+				+0.2
1,605,229	+				-1.1
1,605,229	+				+0.2
1,605,230	-				+2.0
1,605,230	-				-0.6
1,605,312	+		LRK54_RS07445	0.21	-1.0
1,605,312	+		LRK54_RS07445	0.21	-0.1
1,605,312	+		LRK54_RS07445	0.21	+0.3
1,605,312	+		LRK54_RS07445	0.21	-1.2
1,605,312	+		LRK54_RS07445	0.21	+0.6
1,605,313	-		LRK54_RS07445	0.21	-0.8
1,605,313	-		LRK54_RS07445	0.21	-1.7
1,605,313	-		LRK54_RS07445	0.21	-0.5
1,605,313	-		LRK54_RS07445	0.21	+1.3
1,605,339	+		LRK54_RS07445	0.27	+0.2
1,605,339	+		LRK54_RS07445	0.27	-0.5
1,605,339	+		LRK54_RS07445	0.27	+0.2
1,605,339	+		LRK54_RS07445	0.27	-0.7
1,605,339	+		LRK54_RS07445	0.27	-0.5
1,605,339	+		LRK54_RS07445	0.27	+0.3
1,605,340	-		LRK54_RS07445	0.27	-0.3
1,605,340	-		LRK54_RS07445	0.27	+0.1
1,605,340	-		LRK54_RS07445	0.27	+0.5
1,605,340	-		LRK54_RS07445	0.27	-2.4
1,605,369	+		LRK54_RS07445	0.35	-0.8
1,605,369	+		LRK54_RS07445	0.35	-0.1
1,605,369	+		LRK54_RS07445	0.35	-0.4
1,605,369	+		LRK54_RS07445	0.35	-1.3
1,605,369	+		LRK54_RS07445	0.35	-1.0
1,605,370	-		LRK54_RS07445	0.35	+0.5
1,605,370	-		LRK54_RS07445	0.35	-2.7
1,605,370	-		LRK54_RS07445	0.35	-1.2
1,605,370	-		LRK54_RS07445	0.35	-1.2
1,605,370	-		LRK54_RS07445	0.35	-0.3
1,605,370	-		LRK54_RS07445	0.35	-0.6
1,605,370	-		LRK54_RS07445	0.35	-0.2
1,605,370	-		LRK54_RS07445	0.35	-1.6
1,605,672	+				-0.9
1,605,673	-				-0.0
1,605,706	+				-0.6
1,605,706	+				-1.1
1,605,706	+				-0.5
1,605,706	+				-1.0
1,605,707	-				+0.3
1,605,707	-				-2.1
1,605,707	-				-0.5
1,605,849	+		LRK54_RS07450	0.14	-1.0
1,605,850	-		LRK54_RS07450	0.14	+1.2
1,605,976	+		LRK54_RS07450	0.24	-1.2
1,605,976	+		LRK54_RS07450	0.24	+0.1
1,605,976	+		LRK54_RS07450	0.24	+0.5
1,605,976	+		LRK54_RS07450	0.24	-0.7
1,605,976	+		LRK54_RS07450	0.24	-2.5
1,605,976	+		LRK54_RS07450	0.24	-1.1
1,605,976	+		LRK54_RS07450	0.24	-1.5
1,605,976	+		LRK54_RS07450	0.24	+0.5
1,605,976	+		LRK54_RS07450	0.24	-1.5
1,605,976	+		LRK54_RS07450	0.24	-0.0
1,605,976	+		LRK54_RS07450	0.24	-0.9
1,605,976	+		LRK54_RS07450	0.24	-0.4
1,605,976	+		LRK54_RS07450	0.24	-1.2
1,605,977	-		LRK54_RS07450	0.24	-0.2
1,605,977	-		LRK54_RS07450	0.24	-1.4
1,605,977	-		LRK54_RS07450	0.24	-0.8
1,605,977	-		LRK54_RS07450	0.24	+0.2
1,605,977	-		LRK54_RS07450	0.24	-0.1
1,605,977	-		LRK54_RS07450	0.24	-0.0
1,605,977	-		LRK54_RS07450	0.24	+0.2
1,605,977	-		LRK54_RS07450	0.24	-0.8
1,605,977	-		LRK54_RS07450	0.24	+0.0
1,605,977	-		LRK54_RS07450	0.24	+1.3
1,605,983	-		LRK54_RS07450	0.24	+0.3
1,606,005	+		LRK54_RS07450	0.26	-1.2
1,606,005	+		LRK54_RS07450	0.26	-0.1
1,606,005	+		LRK54_RS07450	0.26	-0.2
1,606,005	+		LRK54_RS07450	0.26	-0.1
1,606,006	-		LRK54_RS07450	0.26	-1.0
1,606,006	-		LRK54_RS07450	0.26	-0.0
1,606,006	-		LRK54_RS07450	0.26	-0.7
1,606,006	-		LRK54_RS07450	0.26	+0.2
1,606,034	+		LRK54_RS07450	0.28	-1.8
1,606,034	+		LRK54_RS07450	0.28	+0.4
1,606,034	+		LRK54_RS07450	0.28	-1.5
1,606,034	+		LRK54_RS07450	0.28	-1.8
1,606,034	+		LRK54_RS07450	0.28	+0.8
1,606,034	+		LRK54_RS07450	0.28	+0.5
1,606,034	+		LRK54_RS07450	0.28	-0.8
1,606,034	+		LRK54_RS07450	0.28	-0.6
1,606,035	-		LRK54_RS07450	0.28	-0.7
1,606,035	-		LRK54_RS07450	0.28	-0.5
1,606,035	-		LRK54_RS07450	0.28	-1.4
1,606,111	+		LRK54_RS07450	0.34	+0.3
1,606,111	+		LRK54_RS07450	0.34	+0.4
1,606,112	-		LRK54_RS07450	0.34	+0.2
1,606,117	-		LRK54_RS07450	0.35	+0.2
1,606,203	+		LRK54_RS07450	0.41	+0.8
1,606,203	+		LRK54_RS07450	0.41	+0.6
1,606,203	+		LRK54_RS07450	0.41	+0.2
1,606,204	-		LRK54_RS07450	0.41	-0.8
1,606,204	-		LRK54_RS07450	0.41	-0.3
1,606,204	-		LRK54_RS07450	0.41	+0.5
1,606,204	-		LRK54_RS07450	0.41	+0.3
1,606,204	-		LRK54_RS07450	0.41	+0.8
1,606,204	-		LRK54_RS07450	0.41	-0.3
1,606,234	+		LRK54_RS07450	0.44	-0.5
1,606,235	-		LRK54_RS07450	0.44	-1.2
1,606,235	-		LRK54_RS07450	0.44	+0.2
1,606,235	-		LRK54_RS07450	0.44	-1.3
1,606,235	-		LRK54_RS07450	0.44	+0.3
1,606,235	-		LRK54_RS07450	0.44	-1.8
1,606,237	-		LRK54_RS07450	0.44	-0.1
1,606,331	+		LRK54_RS07450	0.51	+3.3
1,606,331	+		LRK54_RS07450	0.51	+0.3
1,606,331	+		LRK54_RS07450	0.51	-0.1
1,606,331	+		LRK54_RS07450	0.51	-0.5
1,606,331	+		LRK54_RS07450	0.51	+0.4
1,606,331	+		LRK54_RS07450	0.51	+0.2
1,606,332	-		LRK54_RS07450	0.51	-0.0
1,606,332	-		LRK54_RS07450	0.51	+1.3
1,606,332	-		LRK54_RS07450	0.51	-0.3
1,606,332	-		LRK54_RS07450	0.51	-0.7
1,606,335	+		LRK54_RS07450	0.52	+0.4
1,606,335	+		LRK54_RS07450	0.52	+0.5
1,606,335	+		LRK54_RS07450	0.52	+0.5
1,606,335	+		LRK54_RS07450	0.52	-0.7
1,606,336	-		LRK54_RS07450	0.52	-0.2
1,606,336	-		LRK54_RS07450	0.52	-1.3
1,606,336	-		LRK54_RS07450	0.52	-1.5
1,606,336	-		LRK54_RS07450	0.52	+0.9
1,606,369	-		LRK54_RS07450	0.54	-1.2
1,606,392	+		LRK54_RS07450	0.56	-1.3
1,606,392	+		LRK54_RS07450	0.56	-0.5
1,606,392	+		LRK54_RS07450	0.56	-0.7
1,606,392	+		LRK54_RS07450	0.56	-0.3
1,606,392	+		LRK54_RS07450	0.56	-0.2
1,606,393	-		LRK54_RS07450	0.56	+0.9
1,606,393	-		LRK54_RS07450	0.56	+2.9
1,606,393	-		LRK54_RS07450	0.56	-0.6
1,606,393	-		LRK54_RS07450	0.56	-0.3
1,606,393	-		LRK54_RS07450	0.56	-0.0
1,606,437	+		LRK54_RS07450	0.60	-0.0
1,606,438	-		LRK54_RS07450	0.60	-0.2
1,606,438	-		LRK54_RS07450	0.60	-0.2
1,606,497	+		LRK54_RS07450	0.64	+1.1
1,606,498	-		LRK54_RS07450	0.64	+0.1
1,606,498	-		LRK54_RS07450	0.64	-0.6
1,606,498	-		LRK54_RS07450	0.64	+0.6
1,606,498	-		LRK54_RS07450	0.64	-0.6
1,606,498	-		LRK54_RS07450	0.64	+0.0
1,606,498	-		LRK54_RS07450	0.64	-0.8
1,606,553	-		LRK54_RS07450	0.69	-0.9
1,606,561	+		LRK54_RS07450	0.69	+0.3
1,606,561	+		LRK54_RS07450	0.69	-1.0
1,606,561	+		LRK54_RS07450	0.69	+0.3
1,606,562	-		LRK54_RS07450	0.69	-1.1
1,606,593	+		LRK54_RS07450	0.72	-0.5
1,606,593	+		LRK54_RS07450	0.72	-0.9
1,606,593	+		LRK54_RS07450	0.72	-0.5
1,606,593	+		LRK54_RS07450	0.72	-0.3
1,606,593	+		LRK54_RS07450	0.72	+1.5
1,606,593	+		LRK54_RS07450	0.72	+1.9
1,606,593	+		LRK54_RS07450	0.72	-0.7
1,606,594	-		LRK54_RS07450	0.72	+0.9
1,606,594	-		LRK54_RS07450	0.72	-0.7
1,606,594	-		LRK54_RS07450	0.72	+0.4
1,606,594	-		LRK54_RS07450	0.72	+0.3
1,606,594	-		LRK54_RS07450	0.72	-1.8
1,606,596	+		LRK54_RS07450	0.72	-0.2
1,606,596	+		LRK54_RS07450	0.72	+0.1
1,606,596	+		LRK54_RS07450	0.72	-1.3
1,606,596	+		LRK54_RS07450	0.72	-0.7
1,606,596	+		LRK54_RS07450	0.72	+0.2
1,606,596	+		LRK54_RS07450	0.72	+0.7
1,606,596	+		LRK54_RS07450	0.72	+0.3
1,606,597	-		LRK54_RS07450	0.72	+1.1
1,606,597	-		LRK54_RS07450	0.72	+1.7
1,606,614	+		LRK54_RS07450	0.73	+1.1
1,606,614	+		LRK54_RS07450	0.73	-0.0
1,606,614	+		LRK54_RS07450	0.73	-1.5
1,606,614	+		LRK54_RS07450	0.73	+0.0
1,606,615	-		LRK54_RS07450	0.73	+0.1
1,606,615	-		LRK54_RS07450	0.73	-0.0
1,606,615	-		LRK54_RS07450	0.73	-0.7
1,606,615	-		LRK54_RS07450	0.73	-0.8
1,606,615	-		LRK54_RS07450	0.73	-0.8
1,606,615	-		LRK54_RS07450	0.73	-1.4
1,606,615	-		LRK54_RS07450	0.73	+0.7
1,606,615	-		LRK54_RS07450	0.73	+0.4
1,606,615	-		LRK54_RS07450	0.73	+1.0