Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22285 and CA265_RS22290 are separated by 99 nucleotides CA265_RS22290 and CA265_RS22295 overlap by 29 nucleotides CA265_RS22295 and CA265_RS22300 are separated by 0 nucleotides
CA265_RS22285: CA265_RS22285 - LysR family transcriptional regulator, at 5,475,921 to 5,476,823
_RS22285
CA265_RS22290: CA265_RS22290 - NADPH quinone reductase MdaB, at 5,476,923 to 5,477,552
_RS22290
CA265_RS22295: CA265_RS22295 - hypothetical protein, at 5,477,524 to 5,477,808
_RS22295
CA265_RS22300: CA265_RS22300 - EamA family transporter, at 5,477,809 to 5,478,660
_RS22300
Position (kb) 5476
5477
5478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5475.923 kb on - strand at 5475.924 kb on + strand at 5475.957 kb on - strand at 5475.979 kb on + strand at 5475.979 kb on + strand at 5476.008 kb on + strand at 5476.050 kb on + strand, within CA265_RS22285 at 5476.097 kb on + strand, within CA265_RS22285 at 5476.129 kb on - strand, within CA265_RS22285 at 5476.129 kb on - strand, within CA265_RS22285 at 5476.129 kb on - strand, within CA265_RS22285 at 5476.156 kb on + strand, within CA265_RS22285 at 5476.157 kb on - strand, within CA265_RS22285 at 5476.157 kb on - strand, within CA265_RS22285 at 5476.191 kb on - strand, within CA265_RS22285 at 5476.254 kb on + strand, within CA265_RS22285 at 5476.275 kb on + strand, within CA265_RS22285 at 5476.372 kb on - strand, within CA265_RS22285 at 5476.404 kb on - strand, within CA265_RS22285 at 5476.413 kb on + strand, within CA265_RS22285 at 5476.414 kb on - strand, within CA265_RS22285 at 5476.487 kb on + strand, within CA265_RS22285 at 5476.494 kb on - strand, within CA265_RS22285 at 5476.532 kb on + strand, within CA265_RS22285 at 5476.628 kb on - strand, within CA265_RS22285 at 5476.687 kb on + strand, within CA265_RS22285 at 5476.697 kb on - strand, within CA265_RS22285 at 5476.713 kb on + strand, within CA265_RS22285 at 5476.784 kb on - strand at 5476.784 kb on - strand at 5476.818 kb on - strand at 5476.893 kb on - strand at 5476.904 kb on - strand at 5477.026 kb on + strand, within CA265_RS22290 at 5477.054 kb on + strand, within CA265_RS22290 at 5477.068 kb on - strand, within CA265_RS22290 at 5477.114 kb on - strand, within CA265_RS22290 at 5477.179 kb on + strand, within CA265_RS22290 at 5477.195 kb on + strand, within CA265_RS22290 at 5477.283 kb on + strand, within CA265_RS22290 at 5477.283 kb on + strand, within CA265_RS22290 at 5477.284 kb on - strand, within CA265_RS22290 at 5477.286 kb on - strand, within CA265_RS22290 at 5477.324 kb on + strand, within CA265_RS22290 at 5477.325 kb on - strand, within CA265_RS22290 at 5477.330 kb on - strand, within CA265_RS22290 at 5477.474 kb on + strand, within CA265_RS22290 at 5477.523 kb on + strand at 5477.533 kb on + strand at 5477.546 kb on + strand at 5477.550 kb on + strand at 5477.550 kb on + strand at 5477.579 kb on + strand, within CA265_RS22295 at 5477.599 kb on - strand, within CA265_RS22295 at 5477.667 kb on + strand, within CA265_RS22295 at 5477.668 kb on - strand, within CA265_RS22295 at 5477.708 kb on + strand, within CA265_RS22295 at 5477.733 kb on + strand, within CA265_RS22295 at 5477.810 kb on + strand at 5477.810 kb on + strand at 5477.811 kb on - strand at 5477.897 kb on + strand, within CA265_RS22300 at 5477.954 kb on - strand, within CA265_RS22300 at 5477.986 kb on - strand, within CA265_RS22300 at 5478.025 kb on + strand, within CA265_RS22300 at 5478.025 kb on + strand, within CA265_RS22300 at 5478.026 kb on - strand, within CA265_RS22300 at 5478.026 kb on - strand, within CA265_RS22300 at 5478.055 kb on + strand, within CA265_RS22300 at 5478.076 kb on + strand, within CA265_RS22300 at 5478.161 kb on - strand, within CA265_RS22300 at 5478.185 kb on - strand, within CA265_RS22300 at 5478.215 kb on - strand, within CA265_RS22300 at 5478.252 kb on + strand, within CA265_RS22300 at 5478.295 kb on + strand, within CA265_RS22300 at 5478.397 kb on + strand at 5478.397 kb on + strand, within CA265_RS22300 at 5478.407 kb on + strand, within CA265_RS22300 at 5478.408 kb on - strand, within CA265_RS22300 at 5478.412 kb on + strand, within CA265_RS22300 at 5478.476 kb on - strand, within CA265_RS22300 at 5478.496 kb on - strand, within CA265_RS22300 at 5478.523 kb on + strand, within CA265_RS22300 at 5478.523 kb on + strand, within CA265_RS22300
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 5,475,923 - -1.7 5,475,924 + -0.0 5,475,957 - +0.6 5,475,979 + +1.0 5,475,979 + +0.1 5,476,008 + -0.0 5,476,050 + CA265_RS22285 0.14 -0.4 5,476,097 + CA265_RS22285 0.19 -0.9 5,476,129 - CA265_RS22285 0.23 -0.2 5,476,129 - CA265_RS22285 0.23 -0.1 5,476,129 - CA265_RS22285 0.23 -0.9 5,476,156 + CA265_RS22285 0.26 +1.5 5,476,157 - CA265_RS22285 0.26 -0.8 5,476,157 - CA265_RS22285 0.26 +0.1 5,476,191 - CA265_RS22285 0.30 +0.4 5,476,254 + CA265_RS22285 0.37 +0.3 5,476,275 + CA265_RS22285 0.39 +0.1 5,476,372 - CA265_RS22285 0.50 +0.5 5,476,404 - CA265_RS22285 0.53 -0.5 5,476,413 + CA265_RS22285 0.54 +0.5 5,476,414 - CA265_RS22285 0.55 +1.6 5,476,487 + CA265_RS22285 0.63 -0.5 5,476,494 - CA265_RS22285 0.63 +1.2 5,476,532 + CA265_RS22285 0.68 -0.4 5,476,628 - CA265_RS22285 0.78 +1.1 5,476,687 + CA265_RS22285 0.85 -0.1 5,476,697 - CA265_RS22285 0.86 -0.2 5,476,713 + CA265_RS22285 0.88 +0.8 5,476,784 - -0.6 5,476,784 - -0.2 5,476,818 - +0.3 5,476,893 - +0.8 5,476,904 - +2.0 5,477,026 + CA265_RS22290 0.16 -0.3 5,477,054 + CA265_RS22290 0.21 -1.0 5,477,068 - CA265_RS22290 0.23 +0.4 5,477,114 - CA265_RS22290 0.30 -0.7 5,477,179 + CA265_RS22290 0.41 -2.1 5,477,195 + CA265_RS22290 0.43 +0.6 5,477,283 + CA265_RS22290 0.57 -0.6 5,477,283 + CA265_RS22290 0.57 -0.0 5,477,284 - CA265_RS22290 0.57 -1.5 5,477,286 - CA265_RS22290 0.58 +0.6 5,477,324 + CA265_RS22290 0.64 -0.3 5,477,325 - CA265_RS22290 0.64 -2.1 5,477,330 - CA265_RS22290 0.65 -0.5 5,477,474 + CA265_RS22290 0.87 -2.9 5,477,523 + +0.7 5,477,533 + -0.4 5,477,546 + -0.7 5,477,550 + +0.2 5,477,550 + -0.7 5,477,579 + CA265_RS22295 0.19 -1.0 5,477,599 - CA265_RS22295 0.26 -0.1 5,477,667 + CA265_RS22295 0.50 -3.2 5,477,668 - CA265_RS22295 0.51 -0.9 5,477,708 + CA265_RS22295 0.65 +0.5 5,477,733 + CA265_RS22295 0.73 -1.3 5,477,810 + +0.6 5,477,810 + -1.0 5,477,811 - +0.6 5,477,897 + CA265_RS22300 0.10 -0.3 5,477,954 - CA265_RS22300 0.17 -1.0 5,477,986 - CA265_RS22300 0.21 -0.8 5,478,025 + CA265_RS22300 0.25 +0.4 5,478,025 + CA265_RS22300 0.25 -1.0 5,478,026 - CA265_RS22300 0.25 +0.6 5,478,026 - CA265_RS22300 0.25 -0.6 5,478,055 + CA265_RS22300 0.29 +0.8 5,478,076 + CA265_RS22300 0.31 +0.5 5,478,161 - CA265_RS22300 0.41 +0.2 5,478,185 - CA265_RS22300 0.44 -1.9 5,478,215 - CA265_RS22300 0.48 +0.4 5,478,252 + CA265_RS22300 0.52 -0.5 5,478,295 + CA265_RS22300 0.57 -1.1 5,478,397 + +0.3 5,478,397 + CA265_RS22300 0.69 -0.7 5,478,407 + CA265_RS22300 0.70 +0.8 5,478,408 - CA265_RS22300 0.70 +0.5 5,478,412 + CA265_RS22300 0.71 -0.0 5,478,476 - CA265_RS22300 0.78 +0.3 5,478,496 - CA265_RS22300 0.81 -0.7 5,478,523 + CA265_RS22300 0.84 -1.4 5,478,523 + CA265_RS22300 0.84 -1.0
Or see this region's nucleotide sequence