Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22150 and CA265_RS22155 are separated by 123 nucleotides CA265_RS22155 and CA265_RS22160 are separated by 314 nucleotides CA265_RS22160 and CA265_RS22165 are separated by 131 nucleotides
CA265_RS22150: CA265_RS22150 - type VI secretion system contractile sheath protein TssC, at 5,444,030 to 5,445,418
_RS22150
CA265_RS22155: CA265_RS22155 - hypothetical protein, at 5,445,542 to 5,446,114
_RS22155
CA265_RS22160: CA265_RS22160 - hypothetical protein, at 5,446,429 to 5,446,824
_RS22160
CA265_RS22165: CA265_RS22165 - hypothetical protein, at 5,446,956 to 5,447,351
_RS22165
Position (kb) 5445
5446
5447 Strain fitness (log2 ratio) -1
0
1
2 at 5444.550 kb on + strand, within CA265_RS22150 at 5444.550 kb on + strand, within CA265_RS22150 at 5444.551 kb on - strand, within CA265_RS22150 at 5444.551 kb on - strand, within CA265_RS22150 at 5444.583 kb on + strand, within CA265_RS22150 at 5444.671 kb on + strand, within CA265_RS22150 at 5444.672 kb on - strand, within CA265_RS22150 at 5444.785 kb on - strand, within CA265_RS22150 at 5444.788 kb on + strand, within CA265_RS22150 at 5444.789 kb on - strand, within CA265_RS22150 at 5444.789 kb on - strand, within CA265_RS22150 at 5444.809 kb on - strand, within CA265_RS22150 at 5444.889 kb on - strand at 5444.892 kb on - strand, within CA265_RS22150 at 5445.076 kb on + strand, within CA265_RS22150 at 5445.077 kb on - strand, within CA265_RS22150 at 5445.085 kb on - strand, within CA265_RS22150 at 5445.116 kb on + strand, within CA265_RS22150 at 5445.118 kb on + strand, within CA265_RS22150 at 5445.119 kb on - strand, within CA265_RS22150 at 5445.208 kb on + strand, within CA265_RS22150 at 5445.386 kb on - strand at 5445.398 kb on - strand at 5445.398 kb on - strand at 5445.404 kb on + strand at 5445.450 kb on + strand at 5445.451 kb on - strand at 5445.479 kb on + strand at 5445.486 kb on + strand at 5445.552 kb on + strand at 5445.552 kb on + strand at 5445.553 kb on - strand at 5445.718 kb on - strand, within CA265_RS22155 at 5445.718 kb on - strand, within CA265_RS22155 at 5445.718 kb on - strand, within CA265_RS22155 at 5445.793 kb on - strand, within CA265_RS22155 at 5445.793 kb on - strand, within CA265_RS22155 at 5445.834 kb on + strand, within CA265_RS22155 at 5445.876 kb on + strand, within CA265_RS22155 at 5445.876 kb on + strand, within CA265_RS22155 at 5445.877 kb on - strand, within CA265_RS22155 at 5445.890 kb on - strand, within CA265_RS22155 at 5445.968 kb on + strand, within CA265_RS22155 at 5445.969 kb on - strand, within CA265_RS22155 at 5446.028 kb on - strand, within CA265_RS22155 at 5446.168 kb on - strand at 5446.177 kb on + strand at 5446.177 kb on + strand at 5446.177 kb on + strand at 5446.178 kb on - strand at 5446.256 kb on + strand at 5446.268 kb on + strand at 5446.276 kb on + strand at 5446.277 kb on - strand at 5446.341 kb on - strand at 5446.627 kb on - strand, within CA265_RS22160 at 5446.857 kb on - strand at 5446.857 kb on - strand at 5446.879 kb on + strand at 5446.879 kb on + strand at 5446.944 kb on - strand at 5446.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 5,444,550 + CA265_RS22150 0.37 -0.6 5,444,550 + CA265_RS22150 0.37 +0.1 5,444,551 - CA265_RS22150 0.38 -0.1 5,444,551 - CA265_RS22150 0.38 -0.1 5,444,583 + CA265_RS22150 0.40 -0.2 5,444,671 + CA265_RS22150 0.46 -0.2 5,444,672 - CA265_RS22150 0.46 -0.3 5,444,785 - CA265_RS22150 0.54 +1.0 5,444,788 + CA265_RS22150 0.55 -0.9 5,444,789 - CA265_RS22150 0.55 -0.4 5,444,789 - CA265_RS22150 0.55 +0.4 5,444,809 - CA265_RS22150 0.56 +0.6 5,444,889 - +2.3 5,444,892 - CA265_RS22150 0.62 -0.0 5,445,076 + CA265_RS22150 0.75 +0.2 5,445,077 - CA265_RS22150 0.75 +0.5 5,445,085 - CA265_RS22150 0.76 +0.6 5,445,116 + CA265_RS22150 0.78 -0.0 5,445,118 + CA265_RS22150 0.78 +1.5 5,445,119 - CA265_RS22150 0.78 -0.4 5,445,208 + CA265_RS22150 0.85 -0.1 5,445,386 - -0.1 5,445,398 - +0.0 5,445,398 - +0.0 5,445,404 + +0.6 5,445,450 + -0.7 5,445,451 - +0.1 5,445,479 + +0.2 5,445,486 + -1.3 5,445,552 + +0.1 5,445,552 + +0.4 5,445,553 - -0.3 5,445,718 - CA265_RS22155 0.31 +0.0 5,445,718 - CA265_RS22155 0.31 -0.6 5,445,718 - CA265_RS22155 0.31 -1.6 5,445,793 - CA265_RS22155 0.44 +0.1 5,445,793 - CA265_RS22155 0.44 +0.7 5,445,834 + CA265_RS22155 0.51 -0.5 5,445,876 + CA265_RS22155 0.58 -0.1 5,445,876 + CA265_RS22155 0.58 +0.5 5,445,877 - CA265_RS22155 0.58 +0.3 5,445,890 - CA265_RS22155 0.61 +0.9 5,445,968 + CA265_RS22155 0.74 -1.0 5,445,969 - CA265_RS22155 0.75 -0.4 5,446,028 - CA265_RS22155 0.85 +0.2 5,446,168 - -0.2 5,446,177 + +0.5 5,446,177 + -1.4 5,446,177 + -0.5 5,446,178 - +0.2 5,446,256 + +0.5 5,446,268 + -0.1 5,446,276 + -0.0 5,446,277 - +1.0 5,446,341 - -1.5 5,446,627 - CA265_RS22160 0.50 -0.9 5,446,857 - -0.2 5,446,857 - -0.7 5,446,879 + +0.5 5,446,879 + -0.7 5,446,944 - -1.6 5,446,944 - -0.1
Or see this region's nucleotide sequence