Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17780 and CA265_RS17785 are separated by 52 nucleotides CA265_RS17785 and CA265_RS17790 overlap by 1 nucleotides CA265_RS17790 and CA265_RS17795 are separated by 25 nucleotides CA265_RS17795 and CA265_RS17800 are separated by 31 nucleotides
CA265_RS17780: CA265_RS17780 - hypothetical protein, at 4,449,228 to 4,449,770
_RS17780
CA265_RS17785: CA265_RS17785 - hypothetical protein, at 4,449,823 to 4,450,518
_RS17785
CA265_RS17790: CA265_RS17790 - caa(3)-type oxidase, at 4,450,518 to 4,450,871
_RS17790
CA265_RS17795: CA265_RS17795 - cytochrome oxidase subunit III, at 4,450,897 to 4,451,610
_RS17795
CA265_RS17800: CA265_RS17800 - heme-copper oxidase subunit III, at 4,451,642 to 4,452,208
_RS17800
Position (kb) 4450
4451 Strain fitness (log2 ratio) -1
0
1
2
3 at 4449.848 kb on - strand at 4449.866 kb on - strand at 4449.922 kb on - strand, within CA265_RS17785 at 4450.159 kb on - strand, within CA265_RS17785 at 4450.203 kb on - strand, within CA265_RS17785 at 4450.203 kb on - strand, within CA265_RS17785 at 4450.243 kb on - strand, within CA265_RS17785 at 4450.243 kb on - strand, within CA265_RS17785 at 4450.332 kb on - strand, within CA265_RS17785 at 4450.414 kb on - strand, within CA265_RS17785 at 4450.414 kb on - strand, within CA265_RS17785 at 4450.468 kb on - strand at 4450.502 kb on - strand at 4450.618 kb on - strand, within CA265_RS17790 at 4450.639 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.704 kb on - strand, within CA265_RS17790 at 4450.854 kb on - strand at 4450.884 kb on - strand at 4451.126 kb on - strand at 4451.362 kb on - strand, within CA265_RS17795 at 4451.469 kb on - strand, within CA265_RS17795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 4,449,848 - -0.4 4,449,866 - +0.5 4,449,922 - CA265_RS17785 0.14 +0.6 4,450,159 - CA265_RS17785 0.48 -1.2 4,450,203 - CA265_RS17785 0.55 +3.0 4,450,203 - CA265_RS17785 0.55 +0.3 4,450,243 - CA265_RS17785 0.60 -0.2 4,450,243 - CA265_RS17785 0.60 +1.1 4,450,332 - CA265_RS17785 0.73 +0.7 4,450,414 - CA265_RS17785 0.85 -0.7 4,450,414 - CA265_RS17785 0.85 +0.7 4,450,468 - -0.2 4,450,502 - -0.5 4,450,618 - CA265_RS17790 0.28 -0.6 4,450,639 - CA265_RS17790 0.34 -1.7 4,450,704 - CA265_RS17790 0.53 -0.9 4,450,704 - CA265_RS17790 0.53 -0.7 4,450,704 - CA265_RS17790 0.53 -1.2 4,450,704 - CA265_RS17790 0.53 -0.7 4,450,854 - +0.8 4,450,884 - +0.7 4,451,126 - +0.7 4,451,362 - CA265_RS17795 0.65 -0.9 4,451,469 - CA265_RS17795 0.80 -0.7
Or see this region's nucleotide sequence