Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17730 and CA265_RS17735 are separated by 78 nucleotides CA265_RS17735 and CA265_RS17740 are separated by 92 nucleotides CA265_RS17740 and CA265_RS17745 are separated by 4 nucleotides CA265_RS17745 and CA265_RS17750 are separated by 117 nucleotides
CA265_RS17730: CA265_RS17730 - hypothetical protein, at 4,436,693 to 4,437,532
_RS17730
CA265_RS17735: CA265_RS17735 - TIGR02453 family protein, at 4,437,611 to 4,438,270
_RS17735
CA265_RS17740: CA265_RS17740 - DUF983 domain-containing protein, at 4,438,363 to 4,438,761
_RS17740
CA265_RS17745: CA265_RS17745 - hypothetical protein, at 4,438,766 to 4,439,038
_RS17745
CA265_RS17750: CA265_RS17750 - hypothetical protein, at 4,439,156 to 4,440,472
_RS17750
Position (kb) 4438
4439 Strain fitness (log2 ratio) -2
-1
0
1 at 4437.365 kb on + strand, within CA265_RS17730 at 4437.365 kb on + strand, within CA265_RS17730 at 4437.365 kb on + strand, within CA265_RS17730 at 4437.378 kb on - strand, within CA265_RS17730 at 4437.395 kb on + strand, within CA265_RS17730 at 4437.396 kb on - strand, within CA265_RS17730 at 4437.415 kb on + strand, within CA265_RS17730 at 4437.415 kb on + strand, within CA265_RS17730 at 4437.417 kb on + strand, within CA265_RS17730 at 4437.417 kb on + strand, within CA265_RS17730 at 4437.418 kb on - strand, within CA265_RS17730 at 4437.418 kb on - strand, within CA265_RS17730 at 4437.465 kb on - strand at 4437.494 kb on - strand at 4437.523 kb on + strand at 4437.620 kb on + strand at 4437.644 kb on + strand at 4437.654 kb on - strand at 4437.679 kb on + strand, within CA265_RS17735 at 4437.699 kb on - strand, within CA265_RS17735 at 4437.809 kb on - strand, within CA265_RS17735 at 4437.848 kb on - strand, within CA265_RS17735 at 4437.852 kb on - strand, within CA265_RS17735 at 4437.877 kb on + strand, within CA265_RS17735 at 4437.878 kb on - strand, within CA265_RS17735 at 4437.988 kb on + strand, within CA265_RS17735 at 4437.988 kb on + strand, within CA265_RS17735 at 4437.989 kb on - strand, within CA265_RS17735 at 4437.989 kb on - strand, within CA265_RS17735 at 4438.031 kb on - strand, within CA265_RS17735 at 4438.032 kb on + strand, within CA265_RS17735 at 4438.076 kb on + strand, within CA265_RS17735 at 4438.076 kb on + strand, within CA265_RS17735 at 4438.077 kb on - strand, within CA265_RS17735 at 4438.142 kb on - strand, within CA265_RS17735 at 4438.249 kb on + strand at 4438.270 kb on + strand at 4438.270 kb on + strand at 4438.270 kb on + strand at 4438.271 kb on - strand at 4438.271 kb on - strand at 4438.271 kb on - strand at 4438.386 kb on - strand at 4438.386 kb on - strand at 4438.418 kb on - strand, within CA265_RS17740 at 4438.425 kb on + strand, within CA265_RS17740 at 4438.436 kb on + strand, within CA265_RS17740 at 4438.437 kb on - strand, within CA265_RS17740 at 4438.484 kb on + strand, within CA265_RS17740 at 4438.572 kb on - strand, within CA265_RS17740 at 4438.577 kb on - strand, within CA265_RS17740 at 4438.580 kb on + strand, within CA265_RS17740 at 4438.581 kb on - strand, within CA265_RS17740 at 4438.581 kb on - strand, within CA265_RS17740 at 4438.581 kb on - strand, within CA265_RS17740 at 4438.592 kb on + strand, within CA265_RS17740 at 4438.617 kb on + strand, within CA265_RS17740 at 4438.618 kb on - strand, within CA265_RS17740 at 4438.671 kb on - strand, within CA265_RS17740 at 4438.674 kb on + strand, within CA265_RS17740 at 4438.716 kb on + strand, within CA265_RS17740 at 4438.716 kb on + strand, within CA265_RS17740 at 4438.723 kb on + strand at 4438.724 kb on - strand at 4438.724 kb on - strand at 4438.795 kb on + strand, within CA265_RS17745 at 4439.049 kb on + strand at 4439.052 kb on - strand at 4439.157 kb on + strand at 4439.317 kb on + strand, within CA265_RS17750 at 4439.339 kb on + strand, within CA265_RS17750 at 4439.339 kb on + strand, within CA265_RS17750 at 4439.365 kb on + strand, within CA265_RS17750 at 4439.366 kb on - strand, within CA265_RS17750 at 4439.435 kb on - strand, within CA265_RS17750 at 4439.438 kb on - strand, within CA265_RS17750 at 4439.521 kb on - strand, within CA265_RS17750 at 4439.543 kb on + strand, within CA265_RS17750 at 4439.575 kb on + strand, within CA265_RS17750 at 4439.576 kb on - strand, within CA265_RS17750 at 4439.638 kb on + strand, within CA265_RS17750 at 4439.653 kb on + strand, within CA265_RS17750
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 4,437,365 + CA265_RS17730 0.80 -1.2 4,437,365 + CA265_RS17730 0.80 -0.6 4,437,365 + CA265_RS17730 0.80 -0.5 4,437,378 - CA265_RS17730 0.82 +0.6 4,437,395 + CA265_RS17730 0.84 +0.5 4,437,396 - CA265_RS17730 0.84 +0.8 4,437,415 + CA265_RS17730 0.86 -0.7 4,437,415 + CA265_RS17730 0.86 +0.5 4,437,417 + CA265_RS17730 0.86 +0.2 4,437,417 + CA265_RS17730 0.86 -0.3 4,437,418 - CA265_RS17730 0.86 +0.7 4,437,418 - CA265_RS17730 0.86 +1.3 4,437,465 - +0.5 4,437,494 - -0.2 4,437,523 + -0.6 4,437,620 + -0.2 4,437,644 + -1.2 4,437,654 - -0.1 4,437,679 + CA265_RS17735 0.10 -0.2 4,437,699 - CA265_RS17735 0.13 +0.5 4,437,809 - CA265_RS17735 0.30 +0.2 4,437,848 - CA265_RS17735 0.36 +0.2 4,437,852 - CA265_RS17735 0.37 +0.3 4,437,877 + CA265_RS17735 0.40 +0.6 4,437,878 - CA265_RS17735 0.40 +0.4 4,437,988 + CA265_RS17735 0.57 -0.9 4,437,988 + CA265_RS17735 0.57 +0.1 4,437,989 - CA265_RS17735 0.57 -0.3 4,437,989 - CA265_RS17735 0.57 +0.1 4,438,031 - CA265_RS17735 0.64 -0.3 4,438,032 + CA265_RS17735 0.64 -0.1 4,438,076 + CA265_RS17735 0.70 +0.4 4,438,076 + CA265_RS17735 0.70 -0.4 4,438,077 - CA265_RS17735 0.71 -1.0 4,438,142 - CA265_RS17735 0.80 -0.4 4,438,249 + -0.6 4,438,270 + +0.2 4,438,270 + +0.5 4,438,270 + +0.5 4,438,271 - +0.9 4,438,271 - -0.4 4,438,271 - -0.2 4,438,386 - -0.1 4,438,386 - -0.4 4,438,418 - CA265_RS17740 0.14 +0.3 4,438,425 + CA265_RS17740 0.16 +0.1 4,438,436 + CA265_RS17740 0.18 -0.7 4,438,437 - CA265_RS17740 0.19 +0.6 4,438,484 + CA265_RS17740 0.30 +0.4 4,438,572 - CA265_RS17740 0.52 -0.6 4,438,577 - CA265_RS17740 0.54 +0.2 4,438,580 + CA265_RS17740 0.54 +0.2 4,438,581 - CA265_RS17740 0.55 +0.3 4,438,581 - CA265_RS17740 0.55 -0.6 4,438,581 - CA265_RS17740 0.55 +0.1 4,438,592 + CA265_RS17740 0.57 +0.4 4,438,617 + CA265_RS17740 0.64 +1.5 4,438,618 - CA265_RS17740 0.64 +0.9 4,438,671 - CA265_RS17740 0.77 +0.1 4,438,674 + CA265_RS17740 0.78 +0.7 4,438,716 + CA265_RS17740 0.88 -0.2 4,438,716 + CA265_RS17740 0.88 -0.0 4,438,723 + -0.3 4,438,724 - +0.1 4,438,724 - +0.6 4,438,795 + CA265_RS17745 0.11 +0.3 4,439,049 + -1.9 4,439,052 - -0.2 4,439,157 + +0.2 4,439,317 + CA265_RS17750 0.12 +0.3 4,439,339 + CA265_RS17750 0.14 +0.5 4,439,339 + CA265_RS17750 0.14 +0.6 4,439,365 + CA265_RS17750 0.16 +0.2 4,439,366 - CA265_RS17750 0.16 -0.1 4,439,435 - CA265_RS17750 0.21 -0.5 4,439,438 - CA265_RS17750 0.21 +0.3 4,439,521 - CA265_RS17750 0.28 -0.4 4,439,543 + CA265_RS17750 0.29 +0.2 4,439,575 + CA265_RS17750 0.32 +0.8 4,439,576 - CA265_RS17750 0.32 -0.3 4,439,638 + CA265_RS17750 0.37 +0.9 4,439,653 + CA265_RS17750 0.38 +1.4
Or see this region's nucleotide sequence