Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09195

Experiment: R2A with benzoic 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with benzoic 0.1 mg/ml
2,290,708	+		CA265_RS09190	0.48	+0.9
2,290,710	+		CA265_RS09190	0.48	+0.5
2,290,724	+		CA265_RS09190	0.49	-0.6
2,290,725	-		CA265_RS09190	0.49	+0.3
2,290,725	-		CA265_RS09190	0.49	+0.5
2,290,728	-		CA265_RS09190	0.49	+0.1
2,290,791	+		CA265_RS09190	0.53	-0.2
2,290,791	+		CA265_RS09190	0.53	-1.2
2,290,791	+		CA265_RS09190	0.53	+0.4
2,290,792	-		CA265_RS09190	0.53	-0.8
2,290,824	-		CA265_RS09190	0.55	+0.2
2,290,861	+		CA265_RS09190	0.57	+0.1
2,290,862	-		CA265_RS09190	0.57	-0.3
2,290,865	+		CA265_RS09190	0.57	-0.3
2,290,957	+		CA265_RS09190	0.62	+0.2
2,290,981	+		CA265_RS09190	0.64	-0.2
2,290,982	-		CA265_RS09190	0.64	-0.2
2,290,986	-		CA265_RS09190	0.64	+0.1
2,290,991	+		CA265_RS09190	0.64	-0.2
2,291,079	+		CA265_RS09190	0.69	+0.0
2,291,079	+		CA265_RS09190	0.69	+2.2
2,291,079	+		CA265_RS09190	0.69	+0.4
2,291,081	+		CA265_RS09190	0.69	-0.4
2,291,082	-		CA265_RS09190	0.69	+0.6
2,291,082	-		CA265_RS09190	0.69	-0.5
2,291,087	-		CA265_RS09190	0.69	+0.1
2,291,106	-		CA265_RS09190	0.71	-0.0
2,291,153	+		CA265_RS09190	0.73	-0.6
2,291,153	+		CA265_RS09190	0.73	-0.0
2,291,153	+		CA265_RS09190	0.73	-0.8
2,291,153	+		CA265_RS09190	0.73	-0.1
2,291,154	-		CA265_RS09190	0.73	+0.5
2,291,157	+		CA265_RS09190	0.73	+0.4
2,291,157	+		CA265_RS09190	0.73	-0.6
2,291,158	-		CA265_RS09190	0.73	+0.4
2,291,158	-		CA265_RS09190	0.73	-0.5
2,291,242	-		CA265_RS09190	0.78	-0.0
2,291,270	-		CA265_RS09190	0.80	-0.7
2,291,273	+		CA265_RS09190	0.80	-0.5
2,291,274	-		CA265_RS09190	0.80	-0.6
2,291,295	-		CA265_RS09190	0.81	+0.5
2,291,361	-		CA265_RS09190	0.85	-0.2
2,291,374	-		CA265_RS09190	0.85	-0.0
2,291,391	-		CA265_RS09190	0.86	+0.2
2,291,391	-		CA265_RS09190	0.86	-0.6
2,291,436	+		CA265_RS09190	0.89	-0.7
2,291,492	-				-0.1
2,291,492	-				+1.0
2,291,537	-				-0.2
2,291,537	-				-0.2
2,291,553	+				-0.4
2,291,554	-				-0.8
2,291,592	+				-0.3
2,291,592	+				+0.2
2,291,592	+				+0.0
2,291,593	-				-0.6
2,291,593	-				+1.1
2,291,594	-				+0.0
2,291,622	+				-1.6
2,291,623	-				-1.1
2,291,625	-				+0.5
2,291,625	-				+0.1
2,291,644	+				+0.2
2,291,644	+				-0.1
2,291,693	+				+0.3
2,291,694	-				-0.1
2,291,696	+				-0.1
2,291,704	+				+0.1
2,291,704	+				+0.4
2,291,744	-				-0.2
2,291,822	+				-0.7
2,291,823	-				-0.1
2,291,846	+		CA265_RS09195	0.10	-2.0
2,291,988	+		CA265_RS09195	0.20	-0.4
2,292,024	-		CA265_RS09195	0.23	-1.5
2,292,039	+		CA265_RS09195	0.24	-0.4
2,292,039	+		CA265_RS09195	0.24	-1.5
2,292,039	+		CA265_RS09195	0.24	-0.5
2,292,078	-		CA265_RS09195	0.27	-1.1
2,292,158	+		CA265_RS09195	0.32	-0.1
2,292,177	+		CA265_RS09195	0.34	-0.6
2,292,178	-		CA265_RS09195	0.34	-0.4
2,292,197	+		CA265_RS09195	0.35	-0.1
2,292,197	+		CA265_RS09195	0.35	-0.3
2,292,198	-		CA265_RS09195	0.35	-0.9
2,292,612	-		CA265_RS09195	0.65	-0.5
2,292,720	+		CA265_RS09195	0.72	-1.1
2,292,742	-		CA265_RS09195	0.74	-1.4
2,292,777	+		CA265_RS09195	0.76	-0.5
2,292,870	+		CA265_RS09195	0.83	-0.6
2,292,876	-		CA265_RS09195	0.84	-0.3
2,292,876	-		CA265_RS09195	0.84	-0.6
2,293,101	-				+0.2
2,293,116	-				+0.8
2,293,179	+				+0.2
2,293,215	+				+1.3
2,293,224	+				+0.6
2,293,224	+				-0.5
2,293,355	-		CA265_RS09200	0.11	+0.7
2,293,358	+		CA265_RS09200	0.12	-0.0
2,293,358	+		CA265_RS09200	0.12	+0.2
2,293,372	+		CA265_RS09200	0.13	-0.6
2,293,380	-		CA265_RS09200	0.13	-0.5
2,293,469	-		CA265_RS09200	0.20	-0.8
2,293,472	-		CA265_RS09200	0.21	+0.2
2,293,500	-		CA265_RS09200	0.23	+0.1
2,293,519	-		CA265_RS09200	0.24	+0.0
2,293,582	+		CA265_RS09200	0.29	+1.0
2,293,587	+		CA265_RS09200	0.30	+0.6
2,293,591	+		CA265_RS09200	0.30	+0.3
2,293,591	+		CA265_RS09200	0.30	+1.0
2,293,599	+		CA265_RS09200	0.31	+0.2
2,293,600	-		CA265_RS09200	0.31	+0.6
2,293,603	+		CA265_RS09200	0.31	+0.0
2,293,617	+		CA265_RS09200	0.32	+0.4
2,293,749	-		CA265_RS09200	0.43	+1.2
2,293,762	+		CA265_RS09200	0.44	-0.1
2,293,763	-		CA265_RS09200	0.44	-0.1
2,293,771	-		CA265_RS09200	0.45	+0.0
2,293,824	+		CA265_RS09200	0.49	+0.3
2,293,841	-		CA265_RS09200	0.50	-0.1
2,293,870	+		CA265_RS09200	0.53	-0.1
2,293,931	-		CA265_RS09200	0.57	+0.3
2,293,943	+		CA265_RS09200	0.58	+0.2
2,293,944	-		CA265_RS09200	0.58	+0.2