Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06000

Experiment: R2A with benzoic 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with benzoic 0.1 mg/ml
1,474,872	+		CA265_RS05990	0.48	-0.1
1,474,872	+		CA265_RS05990	0.48	+0.2
1,474,908	-		CA265_RS05990	0.55	+0.2
1,474,923	+		CA265_RS05990	0.58	+0.9
1,474,964	+		CA265_RS05990	0.67	+0.2
1,474,968	+		CA265_RS05990	0.67	-0.2
1,474,999	-		CA265_RS05990	0.74	+0.2
1,475,135	+				+0.1
1,475,157	-				+0.2
1,475,173	+				-0.3
1,475,174	-				-0.4
1,475,198	+				-0.6
1,475,203	-				-0.6
1,475,203	-				-0.5
1,475,213	-				-0.2
1,475,217	+				+0.3
1,475,248	-				-0.7
1,475,253	+				-0.4
1,475,254	-				-2.2
1,475,355	-				-0.3
1,475,381	+				-0.2
1,475,384	+				-0.3
1,475,390	+				-1.4
1,475,391	-				-0.2
1,475,472	-				-2.3
1,475,579	+				-0.7
1,475,618	+				-0.4
1,475,672	-		CA265_RS05995	0.18	-0.4
1,475,727	+		CA265_RS05995	0.43	+0.3
1,475,770	-		CA265_RS05995	0.62	+0.1
1,475,792	-		CA265_RS05995	0.72	-0.4
1,475,792	-		CA265_RS05995	0.72	-0.7
1,475,818	-		CA265_RS05995	0.83	+0.2
1,475,818	-		CA265_RS05995	0.83	-0.5
1,475,819	+		CA265_RS05995	0.84	+0.2
1,475,825	+		CA265_RS05995	0.86	-0.3
1,475,826	-		CA265_RS05995	0.87	-0.6
1,475,833	-				+0.0
1,475,901	+				-1.1
1,475,992	+		CA265_RS06000	0.29	-1.2
1,476,038	+		CA265_RS06000	0.39	+0.1
1,476,048	-		CA265_RS06000	0.41	-0.9
1,476,059	+		CA265_RS06000	0.44	-0.0
1,476,060	-		CA265_RS06000	0.44	-0.4
1,476,141	+		CA265_RS06000	0.62	+2.9
1,476,143	+		CA265_RS06000	0.62	-1.2
1,476,144	-		CA265_RS06000	0.62	-0.2
1,476,146	+		CA265_RS06000	0.63	-0.6
1,476,152	-		CA265_RS06000	0.64	-0.5
1,476,243	-		CA265_RS06000	0.84	-0.0
1,476,284	+				-0.7
1,476,302	-				-1.1
1,476,333	+				+0.3
1,476,333	+				-0.8
1,476,334	-				-0.9
1,476,380	+				-1.0
1,476,381	-				+0.3
1,476,381	-				+0.5
1,476,381	-				+0.0
1,476,381	-				+0.4
1,476,382	+				-0.1
1,476,428	+				+0.4
1,476,429	-				-0.8
1,476,441	-				+0.1
1,476,443	+				-0.6
1,476,443	+				-0.0
1,476,443	+				-0.7
1,476,443	+				+0.6
1,476,444	-				-0.5
1,476,497	-				+0.6
1,476,559	-				-0.9
1,476,585	-				+0.5
1,476,672	-				+0.0
1,476,684	-				-1.8
1,476,690	-				-0.0
1,476,833	+				-0.6
1,476,871	+		CA265_RS06005	0.11	+0.1
1,476,880	+		CA265_RS06005	0.13	-0.6
1,476,894	-		CA265_RS06005	0.15	+0.4
1,476,964	-		CA265_RS06005	0.28	+0.5
1,476,975	-		CA265_RS06005	0.30	-0.5
1,476,978	-		CA265_RS06005	0.31	-0.3
1,476,991	+		CA265_RS06005	0.33	-0.9
1,476,991	+		CA265_RS06005	0.33	+0.5
1,476,992	-		CA265_RS06005	0.33	+0.9
1,477,034	-		CA265_RS06005	0.41	-0.9
1,477,034	-		CA265_RS06005	0.41	+0.5
1,477,034	-		CA265_RS06005	0.41	+0.0
1,477,034	-		CA265_RS06005	0.41	+0.1
1,477,053	+		CA265_RS06005	0.45	+0.2
1,477,056	-		CA265_RS06005	0.45	+0.6
1,477,092	-		CA265_RS06005	0.52	-0.2
1,477,191	-		CA265_RS06005	0.70	-0.3
1,477,199	-		CA265_RS06005	0.71	+0.4
1,477,221	-		CA265_RS06005	0.75	-0.0
1,477,251	-		CA265_RS06005	0.81	-0.6
1,477,296	+		CA265_RS06005	0.89	-0.2
1,477,309	+				+0.5
1,477,309	+				+0.0
1,477,314	+				+0.7