Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03995 and CA265_RS04000 are separated by 197 nucleotides CA265_RS04000 and CA265_RS04005 are separated by 47 nucleotides
CA265_RS03995: CA265_RS03995 - hypothetical protein, at 955,023 to 956,654
_RS03995
CA265_RS04000: CA265_RS04000 - hypothetical protein, at 956,852 to 957,172
_RS04000
CA265_RS04005: CA265_RS04005 - hypothetical protein, at 957,220 to 958,779
_RS04005
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.892 kb on - strand, within CA265_RS03995 at 955.996 kb on + strand, within CA265_RS03995 at 956.014 kb on - strand, within CA265_RS03995 at 956.048 kb on - strand, within CA265_RS03995 at 956.064 kb on - strand, within CA265_RS03995 at 956.198 kb on - strand, within CA265_RS03995 at 956.206 kb on + strand, within CA265_RS03995 at 956.207 kb on - strand at 956.313 kb on - strand, within CA265_RS03995 at 956.313 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.336 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.340 kb on - strand, within CA265_RS03995 at 956.346 kb on + strand, within CA265_RS03995 at 956.381 kb on - strand, within CA265_RS03995 at 956.517 kb on + strand at 956.518 kb on - strand at 956.522 kb on + strand at 956.586 kb on + strand at 956.599 kb on - strand at 956.632 kb on + strand at 956.673 kb on - strand at 956.730 kb on + strand at 956.764 kb on - strand at 956.790 kb on - strand at 956.802 kb on + strand at 956.813 kb on + strand at 956.947 kb on + strand, within CA265_RS04000 at 956.970 kb on + strand, within CA265_RS04000 at 957.053 kb on + strand, within CA265_RS04000 at 957.056 kb on + strand, within CA265_RS04000 at 957.078 kb on + strand, within CA265_RS04000 at 957.146 kb on - strand at 957.149 kb on + strand at 957.156 kb on - strand at 957.156 kb on - strand at 957.164 kb on - strand at 957.171 kb on - strand at 957.188 kb on + strand at 957.189 kb on - strand at 957.201 kb on - strand at 957.227 kb on - strand at 957.275 kb on + strand at 957.276 kb on - strand at 957.300 kb on - strand at 957.357 kb on - strand at 957.415 kb on + strand, within CA265_RS04005 at 957.417 kb on + strand, within CA265_RS04005 at 957.445 kb on - strand, within CA265_RS04005 at 957.516 kb on - strand, within CA265_RS04005 at 957.543 kb on - strand, within CA265_RS04005 at 957.546 kb on + strand, within CA265_RS04005 at 957.570 kb on - strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.584 kb on + strand, within CA265_RS04005 at 957.585 kb on - strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.589 kb on + strand, within CA265_RS04005 at 957.611 kb on - strand, within CA265_RS04005 at 957.625 kb on + strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.626 kb on - strand, within CA265_RS04005 at 957.634 kb on - strand, within CA265_RS04005 at 957.736 kb on - strand, within CA265_RS04005 at 957.802 kb on - strand, within CA265_RS04005 at 957.803 kb on + strand, within CA265_RS04005 at 957.803 kb on + strand, within CA265_RS04005 at 957.881 kb on + strand, within CA265_RS04005 at 957.900 kb on + strand, within CA265_RS04005 at 957.900 kb on + strand, within CA265_RS04005 at 957.982 kb on - strand, within CA265_RS04005 at 958.047 kb on + strand, within CA265_RS04005 at 958.048 kb on - strand, within CA265_RS04005 at 958.124 kb on + strand, within CA265_RS04005 at 958.152 kb on - strand, within CA265_RS04005
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 955,864 - CA265_RS03995 0.52 +0.1 955,864 - CA265_RS03995 0.52 -2.1 955,864 - CA265_RS03995 0.52 +0.2 955,892 - CA265_RS03995 0.53 -0.7 955,996 + CA265_RS03995 0.60 -0.3 956,014 - CA265_RS03995 0.61 +0.0 956,048 - CA265_RS03995 0.63 -0.8 956,064 - CA265_RS03995 0.64 -0.5 956,198 - CA265_RS03995 0.72 +0.3 956,206 + CA265_RS03995 0.72 -0.6 956,207 - +0.7 956,313 - CA265_RS03995 0.79 +0.5 956,313 - CA265_RS03995 0.79 -2.0 956,336 - CA265_RS03995 0.80 +0.0 956,336 - CA265_RS03995 0.80 -1.5 956,340 - CA265_RS03995 0.81 +0.1 956,340 - CA265_RS03995 0.81 +0.4 956,346 + CA265_RS03995 0.81 +0.1 956,381 - CA265_RS03995 0.83 +0.3 956,517 + -0.1 956,518 - +0.3 956,522 + -0.1 956,586 + -0.1 956,599 - +0.1 956,632 + -0.0 956,673 - +1.8 956,730 + -0.4 956,764 - +0.2 956,790 - -0.3 956,802 + -0.4 956,813 + -0.8 956,947 + CA265_RS04000 0.30 +0.1 956,970 + CA265_RS04000 0.37 +0.2 957,053 + CA265_RS04000 0.63 +1.3 957,056 + CA265_RS04000 0.64 -1.4 957,078 + CA265_RS04000 0.70 -1.2 957,146 - +0.3 957,149 + -0.2 957,156 - -0.0 957,156 - -0.7 957,164 - -0.5 957,171 - +1.0 957,188 + -0.6 957,189 - -0.3 957,201 - +0.0 957,227 - -0.3 957,275 + +1.0 957,276 - +0.3 957,300 - +0.4 957,357 - +0.3 957,415 + CA265_RS04005 0.12 -0.0 957,417 + CA265_RS04005 0.13 -0.1 957,445 - CA265_RS04005 0.14 -0.1 957,516 - CA265_RS04005 0.19 -0.3 957,543 - CA265_RS04005 0.21 -0.7 957,546 + CA265_RS04005 0.21 +0.7 957,570 - CA265_RS04005 0.22 -0.9 957,584 + CA265_RS04005 0.23 -2.1 957,584 + CA265_RS04005 0.23 -0.1 957,584 + CA265_RS04005 0.23 -0.2 957,584 + CA265_RS04005 0.23 +0.0 957,584 + CA265_RS04005 0.23 +0.3 957,585 - CA265_RS04005 0.23 +0.3 957,589 + CA265_RS04005 0.24 +0.4 957,589 + CA265_RS04005 0.24 +0.5 957,611 - CA265_RS04005 0.25 -0.5 957,625 + CA265_RS04005 0.26 +0.2 957,626 - CA265_RS04005 0.26 -0.6 957,626 - CA265_RS04005 0.26 +0.1 957,634 - CA265_RS04005 0.27 +0.3 957,736 - CA265_RS04005 0.33 -0.4 957,802 - CA265_RS04005 0.37 +0.5 957,803 + CA265_RS04005 0.37 -0.6 957,803 + CA265_RS04005 0.37 +0.0 957,881 + CA265_RS04005 0.42 +0.8 957,900 + CA265_RS04005 0.44 -0.8 957,900 + CA265_RS04005 0.44 +1.3 957,982 - CA265_RS04005 0.49 +0.3 958,047 + CA265_RS04005 0.53 +0.4 958,048 - CA265_RS04005 0.53 +2.8 958,124 + CA265_RS04005 0.58 -0.2 958,152 - CA265_RS04005 0.60 +0.1
Or see this region's nucleotide sequence