Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03555 and CA265_RS03560 are separated by 89 nucleotides CA265_RS03560 and CA265_RS03565 are separated by 128 nucleotides CA265_RS03565 and CA265_RS03570 are separated by 1 nucleotides CA265_RS03570 and CA265_RS03575 are separated by 51 nucleotides
CA265_RS03555: CA265_RS03555 - molecular chaperone DnaJ, at 853,458 to 854,621
_RS03555
CA265_RS03560: CA265_RS03560 - nucleotide exchange factor GrpE, at 854,711 to 855,292
_RS03560
CA265_RS03565: CA265_RS03565 - phosphonate ABC transporter ATP-binding protein, at 855,421 to 856,104
_RS03565
CA265_RS03570: CA265_RS03570 - hypothetical protein, at 856,106 to 856,309
_RS03570
CA265_RS03575: CA265_RS03575 - hypothetical protein, at 856,361 to 858,310
_RS03575
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1 at 854.702 kb on - strand at 855.287 kb on - strand at 855.368 kb on - strand at 855.424 kb on + strand at 855.465 kb on + strand at 855.633 kb on - strand, within CA265_RS03565 at 855.649 kb on - strand, within CA265_RS03565 at 855.702 kb on + strand, within CA265_RS03565 at 855.709 kb on + strand, within CA265_RS03565 at 855.913 kb on - strand, within CA265_RS03565 at 855.933 kb on + strand, within CA265_RS03565 at 855.933 kb on + strand, within CA265_RS03565 at 855.934 kb on - strand, within CA265_RS03565 at 855.937 kb on + strand, within CA265_RS03565 at 855.937 kb on + strand, within CA265_RS03565 at 855.937 kb on + strand, within CA265_RS03565 at 855.948 kb on - strand, within CA265_RS03565 at 855.948 kb on - strand, within CA265_RS03565 at 855.952 kb on + strand, within CA265_RS03565 at 855.953 kb on - strand, within CA265_RS03565 at 855.995 kb on - strand, within CA265_RS03565 at 856.046 kb on - strand at 856.107 kb on + strand at 856.413 kb on + strand at 856.425 kb on + strand at 856.462 kb on + strand at 856.483 kb on + strand at 856.484 kb on - strand at 856.500 kb on - strand at 856.500 kb on - strand at 856.502 kb on + strand at 856.530 kb on - strand at 856.580 kb on + strand, within CA265_RS03575 at 856.671 kb on - strand, within CA265_RS03575 at 856.688 kb on + strand, within CA265_RS03575 at 856.696 kb on - strand, within CA265_RS03575 at 856.699 kb on + strand, within CA265_RS03575 at 856.699 kb on + strand, within CA265_RS03575 at 856.774 kb on - strand, within CA265_RS03575 at 856.805 kb on + strand, within CA265_RS03575 at 856.826 kb on + strand, within CA265_RS03575 at 856.827 kb on - strand, within CA265_RS03575 at 856.872 kb on - strand, within CA265_RS03575 at 856.872 kb on - strand, within CA265_RS03575 at 856.927 kb on + strand, within CA265_RS03575 at 856.930 kb on - strand, within CA265_RS03575 at 856.933 kb on + strand, within CA265_RS03575 at 857.088 kb on - strand, within CA265_RS03575 at 857.096 kb on + strand, within CA265_RS03575
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 854,702 - +0.2 855,287 - -0.1 855,368 - +0.2 855,424 + -0.3 855,465 + -0.6 855,633 - CA265_RS03565 0.31 +1.0 855,649 - CA265_RS03565 0.33 -0.4 855,702 + CA265_RS03565 0.41 +0.8 855,709 + CA265_RS03565 0.42 -0.9 855,913 - CA265_RS03565 0.72 -0.9 855,933 + CA265_RS03565 0.75 +0.4 855,933 + CA265_RS03565 0.75 -0.6 855,934 - CA265_RS03565 0.75 -1.1 855,937 + CA265_RS03565 0.75 +0.1 855,937 + CA265_RS03565 0.75 -0.2 855,937 + CA265_RS03565 0.75 -0.3 855,948 - CA265_RS03565 0.77 -1.1 855,948 - CA265_RS03565 0.77 -0.4 855,952 + CA265_RS03565 0.78 -1.3 855,953 - CA265_RS03565 0.78 -0.9 855,995 - CA265_RS03565 0.84 -1.9 856,046 - -1.4 856,107 + -0.8 856,413 + -0.3 856,425 + -0.5 856,462 + +0.2 856,483 + -0.1 856,484 - -0.3 856,500 - -0.2 856,500 - +1.4 856,502 + +0.4 856,530 - +0.6 856,580 + CA265_RS03575 0.11 +0.1 856,671 - CA265_RS03575 0.16 -0.3 856,688 + CA265_RS03575 0.17 +0.9 856,696 - CA265_RS03575 0.17 -0.9 856,699 + CA265_RS03575 0.17 +1.0 856,699 + CA265_RS03575 0.17 -0.9 856,774 - CA265_RS03575 0.21 -0.1 856,805 + CA265_RS03575 0.23 -0.8 856,826 + CA265_RS03575 0.24 +0.8 856,827 - CA265_RS03575 0.24 -0.1 856,872 - CA265_RS03575 0.26 -0.6 856,872 - CA265_RS03575 0.26 -0.1 856,927 + CA265_RS03575 0.29 +0.7 856,930 - CA265_RS03575 0.29 -0.4 856,933 + CA265_RS03575 0.29 -0.1 857,088 - CA265_RS03575 0.37 +0.0 857,096 + CA265_RS03575 0.38 +0.6
Or see this region's nucleotide sequence