Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01365 and CA265_RS01370 overlap by 4 nucleotides CA265_RS01370 and CA265_RS01375 are separated by 73 nucleotides
CA265_RS01365: CA265_RS01365 - heavy metal translocating P-type ATPase, at 343,477 to 345,861
_RS01365
CA265_RS01370: CA265_RS01370 - cbb3-type cytochrome oxidase assembly protein CcoS, at 345,858 to 346,037
_RS01370
CA265_RS01375: CA265_RS01375 - cytochrome C oxidase Cbb3, at 346,111 to 348,252
_RS01375
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1 at 344.870 kb on + strand, within CA265_RS01365 at 345.066 kb on - strand, within CA265_RS01365 at 345.087 kb on + strand, within CA265_RS01365 at 345.192 kb on - strand, within CA265_RS01365 at 345.226 kb on - strand, within CA265_RS01365 at 345.410 kb on + strand, within CA265_RS01365 at 345.410 kb on + strand, within CA265_RS01365 at 345.410 kb on + strand, within CA265_RS01365 at 345.411 kb on - strand, within CA265_RS01365 at 345.483 kb on - strand, within CA265_RS01365 at 345.510 kb on - strand, within CA265_RS01365 at 345.549 kb on - strand, within CA265_RS01365 at 345.549 kb on - strand, within CA265_RS01365 at 345.666 kb on + strand at 345.667 kb on - strand at 345.715 kb on + strand at 345.715 kb on + strand at 345.790 kb on - strand at 345.793 kb on - strand at 345.871 kb on - strand at 345.958 kb on + strand, within CA265_RS01370 at 345.958 kb on + strand, within CA265_RS01370 at 345.958 kb on + strand, within CA265_RS01370 at 345.959 kb on - strand, within CA265_RS01370 at 345.959 kb on - strand, within CA265_RS01370 at 345.963 kb on - strand, within CA265_RS01370 at 346.042 kb on + strand at 346.043 kb on - strand at 346.070 kb on + strand at 346.107 kb on + strand at 346.108 kb on - strand at 346.110 kb on + strand at 346.137 kb on + strand at 346.185 kb on + strand at 346.185 kb on + strand at 346.188 kb on - strand at 346.257 kb on + strand at 346.342 kb on + strand, within CA265_RS01375 at 346.428 kb on - strand, within CA265_RS01375 at 346.458 kb on + strand, within CA265_RS01375 at 346.459 kb on - strand at 346.501 kb on - strand, within CA265_RS01375 at 346.507 kb on - strand, within CA265_RS01375 at 346.517 kb on + strand, within CA265_RS01375 at 346.518 kb on - strand at 346.578 kb on - strand, within CA265_RS01375 at 346.580 kb on - strand, within CA265_RS01375 at 346.638 kb on - strand, within CA265_RS01375 at 346.678 kb on + strand, within CA265_RS01375 at 346.678 kb on + strand, within CA265_RS01375 at 346.678 kb on + strand, within CA265_RS01375 at 346.774 kb on + strand, within CA265_RS01375 at 346.817 kb on - strand, within CA265_RS01375 at 346.818 kb on + strand, within CA265_RS01375 at 346.819 kb on - strand, within CA265_RS01375 at 346.828 kb on - strand, within CA265_RS01375 at 346.859 kb on - strand, within CA265_RS01375 at 346.883 kb on + strand, within CA265_RS01375 at 346.884 kb on - strand, within CA265_RS01375 at 346.887 kb on - strand, within CA265_RS01375 at 346.889 kb on - strand, within CA265_RS01375 at 346.898 kb on + strand, within CA265_RS01375 at 347.009 kb on + strand, within CA265_RS01375 at 347.009 kb on + strand, within CA265_RS01375 at 347.010 kb on - strand, within CA265_RS01375 at 347.010 kb on - strand, within CA265_RS01375 at 347.010 kb on - strand, within CA265_RS01375 at 347.010 kb on - strand, within CA265_RS01375 at 347.021 kb on + strand, within CA265_RS01375 at 347.021 kb on + strand, within CA265_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 344,870 + CA265_RS01365 0.58 -0.3 345,066 - CA265_RS01365 0.67 +0.0 345,087 + CA265_RS01365 0.68 -0.5 345,192 - CA265_RS01365 0.72 -0.2 345,226 - CA265_RS01365 0.73 -1.0 345,410 + CA265_RS01365 0.81 +0.2 345,410 + CA265_RS01365 0.81 -1.6 345,410 + CA265_RS01365 0.81 -2.5 345,411 - CA265_RS01365 0.81 +0.0 345,483 - CA265_RS01365 0.84 -0.0 345,510 - CA265_RS01365 0.85 +0.1 345,549 - CA265_RS01365 0.87 +0.1 345,549 - CA265_RS01365 0.87 -0.3 345,666 + +0.5 345,667 - +0.0 345,715 + -1.6 345,715 + -0.8 345,790 - +0.8 345,793 - +0.0 345,871 - +0.4 345,958 + CA265_RS01370 0.56 -1.2 345,958 + CA265_RS01370 0.56 -0.9 345,958 + CA265_RS01370 0.56 +0.4 345,959 - CA265_RS01370 0.56 -0.2 345,959 - CA265_RS01370 0.56 -0.1 345,963 - CA265_RS01370 0.58 -0.7 346,042 + +0.0 346,043 - +0.2 346,070 + +0.1 346,107 + -1.7 346,108 - +0.2 346,110 + -0.0 346,137 + +1.3 346,185 + -1.5 346,185 + +0.5 346,188 - -0.5 346,257 + -0.7 346,342 + CA265_RS01375 0.11 -0.2 346,428 - CA265_RS01375 0.15 -0.5 346,458 + CA265_RS01375 0.16 -0.2 346,459 - +1.5 346,501 - CA265_RS01375 0.18 +1.5 346,507 - CA265_RS01375 0.18 -0.1 346,517 + CA265_RS01375 0.19 -0.8 346,518 - -1.3 346,578 - CA265_RS01375 0.22 +0.1 346,580 - CA265_RS01375 0.22 +0.3 346,638 - CA265_RS01375 0.25 -0.5 346,678 + CA265_RS01375 0.26 -0.8 346,678 + CA265_RS01375 0.26 +0.5 346,678 + CA265_RS01375 0.26 -0.9 346,774 + CA265_RS01375 0.31 +0.5 346,817 - CA265_RS01375 0.33 +0.3 346,818 + CA265_RS01375 0.33 +0.7 346,819 - CA265_RS01375 0.33 -0.3 346,828 - CA265_RS01375 0.33 -0.4 346,859 - CA265_RS01375 0.35 -0.1 346,883 + CA265_RS01375 0.36 +0.4 346,884 - CA265_RS01375 0.36 +0.3 346,887 - CA265_RS01375 0.36 +0.0 346,889 - CA265_RS01375 0.36 -0.0 346,898 + CA265_RS01375 0.37 -0.1 347,009 + CA265_RS01375 0.42 -1.4 347,009 + CA265_RS01375 0.42 -0.6 347,010 - CA265_RS01375 0.42 -0.0 347,010 - CA265_RS01375 0.42 +1.3 347,010 - CA265_RS01375 0.42 +0.1 347,010 - CA265_RS01375 0.42 -0.4 347,021 + CA265_RS01375 0.42 +0.7 347,021 + CA265_RS01375 0.42 -0.2
Or see this region's nucleotide sequence