Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01195 and CA265_RS01200 are separated by 34 nucleotides CA265_RS01200 and CA265_RS01205 are separated by 21 nucleotides CA265_RS01205 and CA265_RS01210 are separated by 203 nucleotides
CA265_RS01195: CA265_RS01195 - hypothetical protein, at 298,981 to 299,394
_RS01195
CA265_RS01200: CA265_RS01200 - hypothetical protein, at 299,429 to 299,950
_RS01200
CA265_RS01205: CA265_RS01205 - import component protein, at 299,972 to 300,304
_RS01205
CA265_RS01210: CA265_RS01210 - LuxR family transcriptional regulator, at 300,508 to 302,385
_RS01210
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 298.982 kb on + strand at 299.033 kb on - strand, within CA265_RS01195 at 299.045 kb on - strand, within CA265_RS01195 at 299.078 kb on + strand, within CA265_RS01195 at 299.078 kb on + strand, within CA265_RS01195 at 299.082 kb on + strand, within CA265_RS01195 at 299.107 kb on - strand, within CA265_RS01195 at 299.151 kb on + strand, within CA265_RS01195 at 299.152 kb on - strand, within CA265_RS01195 at 299.186 kb on + strand, within CA265_RS01195 at 299.186 kb on + strand, within CA265_RS01195 at 299.250 kb on + strand, within CA265_RS01195 at 299.281 kb on + strand, within CA265_RS01195 at 299.282 kb on - strand, within CA265_RS01195 at 299.282 kb on - strand, within CA265_RS01195 at 299.292 kb on + strand, within CA265_RS01195 at 299.368 kb on - strand at 299.378 kb on - strand at 299.406 kb on + strand at 299.407 kb on - strand at 299.427 kb on - strand at 299.431 kb on - strand at 299.441 kb on - strand at 299.499 kb on + strand, within CA265_RS01200 at 299.612 kb on + strand, within CA265_RS01200 at 299.619 kb on - strand, within CA265_RS01200 at 299.619 kb on - strand, within CA265_RS01200 at 299.698 kb on + strand, within CA265_RS01200 at 299.730 kb on - strand, within CA265_RS01200 at 299.754 kb on + strand at 299.755 kb on - strand, within CA265_RS01200 at 299.755 kb on - strand, within CA265_RS01200 at 299.757 kb on + strand, within CA265_RS01200 at 299.757 kb on + strand, within CA265_RS01200 at 299.758 kb on - strand, within CA265_RS01200 at 299.764 kb on + strand, within CA265_RS01200 at 299.795 kb on - strand, within CA265_RS01200 at 299.810 kb on - strand, within CA265_RS01200 at 299.876 kb on + strand, within CA265_RS01200 at 299.877 kb on - strand, within CA265_RS01200 at 300.021 kb on - strand, within CA265_RS01205 at 300.053 kb on - strand, within CA265_RS01205 at 300.053 kb on - strand, within CA265_RS01205 at 300.071 kb on + strand, within CA265_RS01205 at 300.072 kb on - strand, within CA265_RS01205 at 300.144 kb on - strand, within CA265_RS01205 at 300.149 kb on - strand, within CA265_RS01205 at 300.153 kb on - strand, within CA265_RS01205 at 300.172 kb on + strand, within CA265_RS01205 at 300.202 kb on + strand, within CA265_RS01205 at 300.203 kb on - strand, within CA265_RS01205 at 300.268 kb on + strand, within CA265_RS01205 at 300.268 kb on + strand, within CA265_RS01205 at 300.269 kb on - strand, within CA265_RS01205 at 300.379 kb on + strand at 300.379 kb on + strand at 300.446 kb on + strand at 300.446 kb on + strand at 300.447 kb on - strand at 300.533 kb on + strand at 300.534 kb on - strand at 300.588 kb on - strand at 300.589 kb on + strand at 300.589 kb on + strand at 300.641 kb on + strand at 300.648 kb on - strand at 300.654 kb on - strand at 300.772 kb on + strand, within CA265_RS01210 at 300.794 kb on - strand, within CA265_RS01210 at 300.794 kb on - strand, within CA265_RS01210 at 300.844 kb on - strand, within CA265_RS01210 at 300.847 kb on + strand, within CA265_RS01210 at 300.847 kb on + strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.848 kb on - strand, within CA265_RS01210 at 300.851 kb on - strand, within CA265_RS01210 at 300.890 kb on + strand, within CA265_RS01210 at 300.917 kb on + strand, within CA265_RS01210 at 300.917 kb on + strand, within CA265_RS01210 at 300.991 kb on + strand, within CA265_RS01210 at 300.991 kb on + strand, within CA265_RS01210 at 300.991 kb on + strand, within CA265_RS01210 at 300.991 kb on + strand, within CA265_RS01210 at 300.992 kb on - strand, within CA265_RS01210 at 300.992 kb on - strand, within CA265_RS01210 at 301.012 kb on + strand, within CA265_RS01210 at 301.012 kb on + strand, within CA265_RS01210 at 301.012 kb on + strand, within CA265_RS01210 at 301.033 kb on + strand, within CA265_RS01210 at 301.034 kb on - strand, within CA265_RS01210 at 301.045 kb on - strand, within CA265_RS01210 at 301.047 kb on + strand, within CA265_RS01210 at 301.138 kb on - strand, within CA265_RS01210 at 301.208 kb on + strand, within CA265_RS01210 at 301.209 kb on - strand, within CA265_RS01210 at 301.229 kb on + strand, within CA265_RS01210 at 301.275 kb on + strand, within CA265_RS01210 at 301.275 kb on + strand, within CA265_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 298,982 + -0.4 299,033 - CA265_RS01195 0.13 -0.3 299,045 - CA265_RS01195 0.15 +0.1 299,078 + CA265_RS01195 0.23 +1.5 299,078 + CA265_RS01195 0.23 +0.2 299,082 + CA265_RS01195 0.24 -0.4 299,107 - CA265_RS01195 0.30 +0.4 299,151 + CA265_RS01195 0.41 +0.6 299,152 - CA265_RS01195 0.41 +0.2 299,186 + CA265_RS01195 0.50 -0.5 299,186 + CA265_RS01195 0.50 +0.1 299,250 + CA265_RS01195 0.65 +0.2 299,281 + CA265_RS01195 0.72 +0.8 299,282 - CA265_RS01195 0.73 -0.4 299,282 - CA265_RS01195 0.73 +0.5 299,292 + CA265_RS01195 0.75 -2.0 299,368 - +0.1 299,378 - -1.9 299,406 + -0.9 299,407 - -0.0 299,427 - +0.5 299,431 - -0.1 299,441 - -0.1 299,499 + CA265_RS01200 0.13 +1.3 299,612 + CA265_RS01200 0.35 +0.1 299,619 - CA265_RS01200 0.36 -0.1 299,619 - CA265_RS01200 0.36 +0.7 299,698 + CA265_RS01200 0.52 +0.8 299,730 - CA265_RS01200 0.58 +0.2 299,754 + +1.6 299,755 - CA265_RS01200 0.62 -0.0 299,755 - CA265_RS01200 0.62 +0.5 299,757 + CA265_RS01200 0.63 -0.1 299,757 + CA265_RS01200 0.63 +0.1 299,758 - CA265_RS01200 0.63 +0.0 299,764 + CA265_RS01200 0.64 -0.4 299,795 - CA265_RS01200 0.70 -0.4 299,810 - CA265_RS01200 0.73 -1.4 299,876 + CA265_RS01200 0.86 +0.1 299,877 - CA265_RS01200 0.86 +0.3 300,021 - CA265_RS01205 0.15 +0.9 300,053 - CA265_RS01205 0.24 +0.2 300,053 - CA265_RS01205 0.24 +0.2 300,071 + CA265_RS01205 0.30 +0.4 300,072 - CA265_RS01205 0.30 -0.0 300,144 - CA265_RS01205 0.52 +0.4 300,149 - CA265_RS01205 0.53 -2.0 300,153 - CA265_RS01205 0.54 +0.5 300,172 + CA265_RS01205 0.60 +0.5 300,202 + CA265_RS01205 0.69 -0.1 300,203 - CA265_RS01205 0.69 +0.1 300,268 + CA265_RS01205 0.89 +0.5 300,268 + CA265_RS01205 0.89 -1.1 300,269 - CA265_RS01205 0.89 +1.1 300,379 + +0.0 300,379 + -0.0 300,446 + +0.2 300,446 + +0.5 300,447 - -0.6 300,533 + -0.6 300,534 - +0.4 300,588 - -0.3 300,589 + +1.4 300,589 + +0.2 300,641 + +0.3 300,648 - +1.0 300,654 - +0.0 300,772 + CA265_RS01210 0.14 +1.0 300,794 - CA265_RS01210 0.15 +0.1 300,794 - CA265_RS01210 0.15 -1.8 300,844 - CA265_RS01210 0.18 +0.2 300,847 + CA265_RS01210 0.18 +0.0 300,847 + CA265_RS01210 0.18 +0.2 300,848 - CA265_RS01210 0.18 +0.8 300,848 - CA265_RS01210 0.18 -1.3 300,848 - CA265_RS01210 0.18 -0.2 300,848 - CA265_RS01210 0.18 +0.3 300,851 - CA265_RS01210 0.18 +1.0 300,890 + CA265_RS01210 0.20 -1.0 300,917 + CA265_RS01210 0.22 -0.4 300,917 + CA265_RS01210 0.22 +0.6 300,991 + CA265_RS01210 0.26 +0.2 300,991 + CA265_RS01210 0.26 -1.6 300,991 + CA265_RS01210 0.26 +0.9 300,991 + CA265_RS01210 0.26 +0.9 300,992 - CA265_RS01210 0.26 +0.1 300,992 - CA265_RS01210 0.26 +1.0 301,012 + CA265_RS01210 0.27 -1.6 301,012 + CA265_RS01210 0.27 -0.3 301,012 + CA265_RS01210 0.27 +0.1 301,033 + CA265_RS01210 0.28 +0.2 301,034 - CA265_RS01210 0.28 +0.4 301,045 - CA265_RS01210 0.29 -0.1 301,047 + CA265_RS01210 0.29 -0.5 301,138 - CA265_RS01210 0.34 +0.8 301,208 + CA265_RS01210 0.37 +0.6 301,209 - CA265_RS01210 0.37 -0.6 301,229 + CA265_RS01210 0.38 -0.6 301,275 + CA265_RS01210 0.41 +0.7 301,275 + CA265_RS01210 0.41 -0.7
Or see this region's nucleotide sequence