Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01060 and CA265_RS01065 are separated by 71 nucleotides CA265_RS01065 and CA265_RS01070 are separated by 312 nucleotides CA265_RS01070 and CA265_RS01075 overlap by 12 nucleotides
CA265_RS01060: CA265_RS01060 - alpha-mannosidase, at 270,501 to 272,585
_RS01060
CA265_RS01065: CA265_RS01065 - hypothetical protein, at 272,657 to 272,848
_RS01065
CA265_RS01070: CA265_RS01070 - NUDIX hydrolase, at 273,161 to 273,619
_RS01070
CA265_RS01075: CA265_RS01075 - DNA alkylation repair protein, at 273,608 to 274,711
_RS01075
Position (kb) 272
273 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 271.662 kb on + strand, within CA265_RS01060 at 271.737 kb on - strand, within CA265_RS01060 at 271.737 kb on - strand, within CA265_RS01060 at 271.737 kb on - strand, within CA265_RS01060 at 271.830 kb on + strand, within CA265_RS01060 at 271.851 kb on + strand, within CA265_RS01060 at 271.924 kb on + strand, within CA265_RS01060 at 271.924 kb on + strand, within CA265_RS01060 at 272.010 kb on + strand, within CA265_RS01060 at 272.010 kb on + strand, within CA265_RS01060 at 272.011 kb on - strand, within CA265_RS01060 at 272.051 kb on + strand, within CA265_RS01060 at 272.051 kb on + strand, within CA265_RS01060 at 272.060 kb on + strand, within CA265_RS01060 at 272.091 kb on + strand, within CA265_RS01060 at 272.092 kb on - strand, within CA265_RS01060 at 272.093 kb on + strand, within CA265_RS01060 at 272.202 kb on - strand, within CA265_RS01060 at 272.235 kb on + strand, within CA265_RS01060 at 272.244 kb on - strand, within CA265_RS01060 at 272.281 kb on - strand, within CA265_RS01060 at 272.368 kb on - strand, within CA265_RS01060 at 272.430 kb on + strand at 272.468 kb on + strand at 272.475 kb on + strand at 272.692 kb on + strand, within CA265_RS01065 at 272.692 kb on + strand, within CA265_RS01065 at 272.697 kb on + strand, within CA265_RS01065 at 272.761 kb on + strand, within CA265_RS01065 at 272.819 kb on + strand, within CA265_RS01065 at 272.835 kb on - strand at 272.876 kb on + strand at 272.876 kb on + strand at 272.883 kb on + strand at 272.883 kb on + strand at 272.932 kb on + strand at 272.932 kb on + strand at 272.932 kb on + strand at 272.971 kb on - strand at 273.100 kb on + strand at 273.101 kb on - strand at 273.154 kb on + strand at 273.276 kb on + strand, within CA265_RS01070 at 273.277 kb on - strand, within CA265_RS01070 at 273.323 kb on - strand, within CA265_RS01070 at 273.334 kb on + strand, within CA265_RS01070 at 273.335 kb on - strand, within CA265_RS01070 at 273.412 kb on - strand, within CA265_RS01070 at 273.464 kb on - strand, within CA265_RS01070 at 273.520 kb on - strand, within CA265_RS01070 at 273.524 kb on - strand, within CA265_RS01070 at 273.548 kb on - strand, within CA265_RS01070 at 273.556 kb on + strand, within CA265_RS01070 at 273.561 kb on - strand, within CA265_RS01070 at 273.609 kb on + strand at 273.609 kb on + strand at 273.610 kb on - strand at 273.774 kb on + strand, within CA265_RS01075 at 273.811 kb on - strand, within CA265_RS01075 at 273.818 kb on - strand, within CA265_RS01075 at 273.822 kb on + strand, within CA265_RS01075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 271,662 + CA265_RS01060 0.56 +0.7 271,737 - CA265_RS01060 0.59 -0.0 271,737 - CA265_RS01060 0.59 -0.3 271,737 - CA265_RS01060 0.59 -0.8 271,830 + CA265_RS01060 0.64 -0.7 271,851 + CA265_RS01060 0.65 +0.6 271,924 + CA265_RS01060 0.68 +0.9 271,924 + CA265_RS01060 0.68 +0.7 272,010 + CA265_RS01060 0.72 -0.8 272,010 + CA265_RS01060 0.72 -0.1 272,011 - CA265_RS01060 0.72 +0.3 272,051 + CA265_RS01060 0.74 -2.0 272,051 + CA265_RS01060 0.74 +0.1 272,060 + CA265_RS01060 0.75 -0.0 272,091 + CA265_RS01060 0.76 +0.1 272,092 - CA265_RS01060 0.76 -0.1 272,093 + CA265_RS01060 0.76 -0.8 272,202 - CA265_RS01060 0.82 -0.5 272,235 + CA265_RS01060 0.83 -1.1 272,244 - CA265_RS01060 0.84 +1.1 272,281 - CA265_RS01060 0.85 -0.7 272,368 - CA265_RS01060 0.90 -0.3 272,430 + +2.9 272,468 + +0.3 272,475 + -1.8 272,692 + CA265_RS01065 0.18 -0.1 272,692 + CA265_RS01065 0.18 -0.0 272,697 + CA265_RS01065 0.21 -1.0 272,761 + CA265_RS01065 0.54 -1.3 272,819 + CA265_RS01065 0.84 -1.3 272,835 - -0.8 272,876 + +0.0 272,876 + -0.8 272,883 + -0.6 272,883 + -1.2 272,932 + +0.8 272,932 + -0.2 272,932 + +0.3 272,971 - +1.5 273,100 + -0.1 273,101 - -0.5 273,154 + -0.8 273,276 + CA265_RS01070 0.25 -0.3 273,277 - CA265_RS01070 0.25 -0.9 273,323 - CA265_RS01070 0.35 -0.6 273,334 + CA265_RS01070 0.38 +0.4 273,335 - CA265_RS01070 0.38 +0.3 273,412 - CA265_RS01070 0.55 +0.5 273,464 - CA265_RS01070 0.66 -0.3 273,520 - CA265_RS01070 0.78 +0.3 273,524 - CA265_RS01070 0.79 +0.5 273,548 - CA265_RS01070 0.84 -0.7 273,556 + CA265_RS01070 0.86 -0.4 273,561 - CA265_RS01070 0.87 -0.6 273,609 + +0.7 273,609 + +0.3 273,610 - -1.5 273,774 + CA265_RS01075 0.15 -1.7 273,811 - CA265_RS01075 0.18 -0.3 273,818 - CA265_RS01075 0.19 +0.7 273,822 + CA265_RS01075 0.19 -0.1
Or see this region's nucleotide sequence