Experiment: CDM1 without Pyridoxamine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13215 and BBR_RS13220 are separated by 292 nucleotides BBR_RS13220 and BBR_RS13225 are separated by 147 nucleotides BBR_RS13225 and BBR_RS13230 are separated by 66 nucleotides BBR_RS13230 and BBR_RS13235 are separated by 274 nucleotides BBR_RS13235 and BBR_RS13240 are separated by 260 nucleotides
BBR_RS13215: BBR_RS13215 - hypothetical protein, at 741,046 to 741,267
_RS13215
BBR_RS13220: BBR_RS13220 - hypothetical protein, at 741,560 to 742,018
_RS13220
BBR_RS13225: BBR_RS13225 - MurR/RpiR family transcriptional regulator, at 742,166 to 743,035
_RS13225
BBR_RS13230: BBR_RS13230 - tRNA-Arg, at 743,102 to 743,178
_RS13230
BBR_RS13235: BBR_RS13235 - hypothetical protein, at 743,453 to 743,638
_RS13235
BBR_RS13240: BBR_RS13240 - sugar ABC transporter substrate-binding protein, at 743,899 to 745,230
_RS13240
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.226 kb on + strand, within BBR_RS13215 at 741.276 kb on + strand at 741.278 kb on + strand at 741.278 kb on + strand at 741.284 kb on - strand at 741.286 kb on - strand at 741.478 kb on + strand at 741.478 kb on + strand at 741.486 kb on - strand at 741.486 kb on - strand at 741.493 kb on - strand at 741.500 kb on + strand at 741.500 kb on + strand at 741.618 kb on + strand, within BBR_RS13220 at 741.742 kb on + strand, within BBR_RS13220 at 741.750 kb on - strand, within BBR_RS13220 at 741.751 kb on - strand, within BBR_RS13220 at 741.823 kb on + strand, within BBR_RS13220 at 741.848 kb on - strand, within BBR_RS13220 at 741.850 kb on - strand, within BBR_RS13220 at 741.956 kb on + strand, within BBR_RS13220 at 741.963 kb on + strand, within BBR_RS13220 at 741.963 kb on + strand, within BBR_RS13220 at 741.963 kb on + strand, within BBR_RS13220 at 741.965 kb on + strand, within BBR_RS13220 at 741.988 kb on - strand at 741.990 kb on - strand at 741.990 kb on - strand at 742.006 kb on - strand at 742.023 kb on - strand at 742.041 kb on - strand at 742.072 kb on + strand at 742.096 kb on - strand at 742.115 kb on + strand at 742.115 kb on + strand at 742.133 kb on - strand at 742.137 kb on + strand at 742.151 kb on - strand at 742.158 kb on + strand at 742.174 kb on - strand at 742.190 kb on - strand at 742.205 kb on + strand at 742.237 kb on - strand at 742.246 kb on + strand at 742.248 kb on + strand at 742.254 kb on - strand, within BBR_RS13225 at 742.321 kb on + strand, within BBR_RS13225 at 742.321 kb on + strand, within BBR_RS13225 at 742.342 kb on - strand, within BBR_RS13225 at 742.375 kb on + strand, within BBR_RS13225 at 742.460 kb on + strand, within BBR_RS13225 at 742.466 kb on - strand, within BBR_RS13225 at 742.539 kb on - strand, within BBR_RS13225 at 742.625 kb on - strand, within BBR_RS13225 at 742.671 kb on - strand, within BBR_RS13225 at 742.685 kb on + strand, within BBR_RS13225 at 742.693 kb on - strand, within BBR_RS13225 at 742.693 kb on - strand, within BBR_RS13225 at 742.698 kb on - strand, within BBR_RS13225 at 742.749 kb on - strand, within BBR_RS13225 at 742.762 kb on + strand, within BBR_RS13225 at 742.832 kb on + strand, within BBR_RS13225 at 742.832 kb on + strand, within BBR_RS13225 at 742.832 kb on + strand, within BBR_RS13225 at 742.850 kb on + strand, within BBR_RS13225 at 742.856 kb on + strand, within BBR_RS13225 at 742.864 kb on - strand, within BBR_RS13225 at 742.869 kb on + strand, within BBR_RS13225 at 742.872 kb on - strand, within BBR_RS13225 at 742.877 kb on - strand, within BBR_RS13225 at 742.894 kb on - strand, within BBR_RS13225 at 742.894 kb on - strand, within BBR_RS13225 at 742.894 kb on - strand, within BBR_RS13225 at 742.940 kb on + strand, within BBR_RS13225 at 742.947 kb on - strand, within BBR_RS13225 at 742.947 kb on - strand, within BBR_RS13225 at 742.948 kb on - strand, within BBR_RS13225 at 742.948 kb on - strand, within BBR_RS13225 at 742.950 kb on - strand at 743.043 kb on + strand at 743.043 kb on + strand at 743.051 kb on - strand at 743.051 kb on - strand at 743.077 kb on + strand at 743.209 kb on + strand at 743.209 kb on + strand at 743.243 kb on + strand at 743.243 kb on + strand at 743.279 kb on - strand at 743.342 kb on - strand at 743.348 kb on - strand at 743.348 kb on - strand at 743.357 kb on + strand at 743.362 kb on + strand at 743.404 kb on + strand at 743.412 kb on - strand at 743.412 kb on - strand at 743.412 kb on - strand at 743.438 kb on + strand at 743.439 kb on + strand at 743.439 kb on + strand at 743.442 kb on - strand at 743.447 kb on - strand at 743.471 kb on - strand at 743.472 kb on - strand, within BBR_RS13235 at 743.480 kb on - strand, within BBR_RS13235 at 743.495 kb on - strand, within BBR_RS13235 at 743.495 kb on - strand, within BBR_RS13235 at 743.495 kb on - strand, within BBR_RS13235 at 743.505 kb on - strand, within BBR_RS13235 at 743.539 kb on - strand, within BBR_RS13235 at 743.542 kb on - strand, within BBR_RS13235 at 743.552 kb on - strand, within BBR_RS13235 at 743.603 kb on + strand, within BBR_RS13235 at 743.603 kb on + strand, within BBR_RS13235 at 743.604 kb on + strand, within BBR_RS13235 at 743.614 kb on - strand, within BBR_RS13235 at 743.616 kb on + strand, within BBR_RS13235 at 743.629 kb on + strand at 743.703 kb on - strand at 743.724 kb on + strand at 743.838 kb on - strand at 743.897 kb on + strand at 744.006 kb on - strand at 744.016 kb on - strand at 744.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Pyridoxamine remove 741,226 + BBR_RS13215 0.81 -3.2 741,276 + -1.0 741,278 + -1.0 741,278 + -1.8 741,284 - +0.4 741,286 - +0.1 741,478 + -0.3 741,478 + -1.5 741,486 - -0.1 741,486 - -0.3 741,493 - -0.7 741,500 + +0.7 741,500 + -0.3 741,618 + BBR_RS13220 0.13 +0.3 741,742 + BBR_RS13220 0.40 +1.9 741,750 - BBR_RS13220 0.41 -1.2 741,751 - BBR_RS13220 0.42 -2.2 741,823 + BBR_RS13220 0.57 -1.1 741,848 - BBR_RS13220 0.63 -0.7 741,850 - BBR_RS13220 0.63 -1.5 741,956 + BBR_RS13220 0.86 -0.7 741,963 + BBR_RS13220 0.88 +0.5 741,963 + BBR_RS13220 0.88 +0.3 741,963 + BBR_RS13220 0.88 +0.1 741,965 + BBR_RS13220 0.88 +0.0 741,988 - -1.1 741,990 - -1.0 741,990 - -1.3 742,006 - -1.7 742,023 - -2.2 742,041 - +0.8 742,072 + -0.3 742,096 - -1.3 742,115 + +0.4 742,115 + +0.2 742,133 - -1.0 742,137 + -0.0 742,151 - -0.0 742,158 + +1.6 742,174 - -1.3 742,190 - +0.2 742,205 + -0.5 742,237 - -0.2 742,246 + +0.1 742,248 + -0.9 742,254 - BBR_RS13225 0.10 -2.0 742,321 + BBR_RS13225 0.18 -1.9 742,321 + BBR_RS13225 0.18 -1.4 742,342 - BBR_RS13225 0.20 -0.1 742,375 + BBR_RS13225 0.24 -0.6 742,460 + BBR_RS13225 0.34 -1.2 742,466 - BBR_RS13225 0.34 +1.5 742,539 - BBR_RS13225 0.43 -0.5 742,625 - BBR_RS13225 0.53 -2.2 742,671 - BBR_RS13225 0.58 -1.4 742,685 + BBR_RS13225 0.60 -0.8 742,693 - BBR_RS13225 0.61 -0.1 742,693 - BBR_RS13225 0.61 -1.5 742,698 - BBR_RS13225 0.61 -0.3 742,749 - BBR_RS13225 0.67 +0.7 742,762 + BBR_RS13225 0.69 -0.1 742,832 + BBR_RS13225 0.77 +0.6 742,832 + BBR_RS13225 0.77 +0.2 742,832 + BBR_RS13225 0.77 -1.3 742,850 + BBR_RS13225 0.79 +0.6 742,856 + BBR_RS13225 0.79 -1.2 742,864 - BBR_RS13225 0.80 -0.2 742,869 + BBR_RS13225 0.81 +0.4 742,872 - BBR_RS13225 0.81 +0.6 742,877 - BBR_RS13225 0.82 +1.0 742,894 - BBR_RS13225 0.84 -0.3 742,894 - BBR_RS13225 0.84 +0.4 742,894 - BBR_RS13225 0.84 -0.3 742,940 + BBR_RS13225 0.89 -0.1 742,947 - BBR_RS13225 0.90 -0.5 742,947 - BBR_RS13225 0.90 -1.5 742,948 - BBR_RS13225 0.90 -0.5 742,948 - BBR_RS13225 0.90 +0.8 742,950 - -1.4 743,043 + -0.2 743,043 + +0.5 743,051 - +0.5 743,051 - -0.7 743,077 + -0.9 743,209 + -0.2 743,209 + -0.5 743,243 + +0.0 743,243 + -1.9 743,279 - +0.4 743,342 - -1.6 743,348 - +0.0 743,348 - +0.6 743,357 + +0.2 743,362 + -0.8 743,404 + +0.1 743,412 - +1.2 743,412 - -1.1 743,412 - +0.3 743,438 + -1.4 743,439 + -1.1 743,439 + +0.1 743,442 - +0.5 743,447 - -1.3 743,471 - -2.2 743,472 - BBR_RS13235 0.10 +0.2 743,480 - BBR_RS13235 0.15 +0.6 743,495 - BBR_RS13235 0.23 +0.1 743,495 - BBR_RS13235 0.23 -0.5 743,495 - BBR_RS13235 0.23 +0.4 743,505 - BBR_RS13235 0.28 -0.8 743,539 - BBR_RS13235 0.46 -0.3 743,542 - BBR_RS13235 0.48 +0.7 743,552 - BBR_RS13235 0.53 -0.2 743,603 + BBR_RS13235 0.81 -0.4 743,603 + BBR_RS13235 0.81 -1.7 743,604 + BBR_RS13235 0.81 -2.2 743,614 - BBR_RS13235 0.87 +0.4 743,616 + BBR_RS13235 0.88 -0.3 743,629 + -0.9 743,703 - -1.8 743,724 + -0.1 743,838 - +1.2 743,897 + +0.3 744,006 - +0.8 744,016 - -0.5 744,024 - +1.0
Or see this region's nucleotide sequence