Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13210

Experiment: CDM1 without Pyridoxamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13205 and BBR_RS13210 are separated by 80 nucleotidesBBR_RS13210 and BBR_RS13215 are separated by 3 nucleotidesBBR_RS13215 and BBR_RS13220 are separated by 292 nucleotides BBR_RS13205: BBR_RS13205 - PLP-dependent aminotransferase family protein, at 738,260 to 739,783 _RS13205 BBR_RS13210: BBR_RS13210 - anion transporter, at 739,864 to 741,042 _RS13210 BBR_RS13215: BBR_RS13215 - hypothetical protein, at 741,046 to 741,267 _RS13215 BBR_RS13220: BBR_RS13220 - hypothetical protein, at 741,560 to 742,018 _RS13220 Position (kb) 739 740 741 742Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 738.879 kb on - strand, within BBR_RS13205at 738.879 kb on - strand, within BBR_RS13205at 738.937 kb on - strand, within BBR_RS13205at 739.024 kb on - strand, within BBR_RS13205at 739.075 kb on + strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.085 kb on + strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.176 kb on - strand, within BBR_RS13205at 739.212 kb on - strand, within BBR_RS13205at 739.229 kb on - strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.253 kb on + strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.302 kb on + strand, within BBR_RS13205at 739.302 kb on - strand, within BBR_RS13205at 739.308 kb on + strand, within BBR_RS13205at 739.315 kb on + strand, within BBR_RS13205at 739.316 kb on - strand, within BBR_RS13205at 739.321 kb on - strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.330 kb on + strand, within BBR_RS13205at 739.331 kb on + strand, within BBR_RS13205at 739.334 kb on - strand, within BBR_RS13205at 739.375 kb on - strand, within BBR_RS13205at 739.398 kb on - strand, within BBR_RS13205at 739.398 kb on - strand, within BBR_RS13205at 739.401 kb on + strand, within BBR_RS13205at 739.419 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.433 kb on + strand, within BBR_RS13205at 739.433 kb on + strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.500 kb on - strand, within BBR_RS13205at 739.523 kb on + strand, within BBR_RS13205at 739.537 kb on + strand, within BBR_RS13205at 739.537 kb on + strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.547 kb on + strand, within BBR_RS13205at 739.555 kb on - strand, within BBR_RS13205at 739.567 kb on - strand, within BBR_RS13205at 739.578 kb on + strand, within BBR_RS13205at 739.582 kb on + strand, within BBR_RS13205at 739.586 kb on - strand, within BBR_RS13205at 739.607 kb on - strand, within BBR_RS13205at 739.665 kb on - strandat 739.690 kb on - strandat 739.754 kb on + strandat 739.754 kb on + strandat 739.762 kb on - strandat 739.762 kb on - strandat 739.769 kb on + strandat 739.932 kb on + strandat 739.969 kb on + strandat 739.972 kb on + strandat 739.978 kb on + strandat 739.978 kb on + strandat 740.032 kb on + strand, within BBR_RS13210at 740.102 kb on - strand, within BBR_RS13210at 740.104 kb on + strand, within BBR_RS13210at 740.140 kb on + strand, within BBR_RS13210at 740.143 kb on - strand, within BBR_RS13210at 740.194 kb on - strand, within BBR_RS13210at 740.218 kb on + strand, within BBR_RS13210at 740.225 kb on - strand, within BBR_RS13210at 740.244 kb on + strand, within BBR_RS13210at 740.260 kb on + strand, within BBR_RS13210at 740.268 kb on - strand, within BBR_RS13210at 740.268 kb on - strand, within BBR_RS13210at 740.479 kb on + strand, within BBR_RS13210at 740.549 kb on - strand, within BBR_RS13210at 740.595 kb on + strand, within BBR_RS13210at 740.659 kb on + strand, within BBR_RS13210at 740.672 kb on - strand, within BBR_RS13210at 740.677 kb on + strand, within BBR_RS13210at 740.753 kb on - strand, within BBR_RS13210at 740.770 kb on - strand, within BBR_RS13210at 740.815 kb on - strand, within BBR_RS13210at 740.878 kb on - strand, within BBR_RS13210at 741.000 kb on + strandat 741.072 kb on - strand, within BBR_RS13215at 741.111 kb on - strand, within BBR_RS13215at 741.226 kb on + strand, within BBR_RS13215at 741.276 kb on + strandat 741.278 kb on + strandat 741.278 kb on + strandat 741.284 kb on - strandat 741.286 kb on - strandat 741.478 kb on + strandat 741.478 kb on + strandat 741.486 kb on - strandat 741.486 kb on - strandat 741.493 kb on - strandat 741.500 kb on + strandat 741.500 kb on + strandat 741.618 kb on + strand, within BBR_RS13220at 741.742 kb on + strand, within BBR_RS13220at 741.750 kb on - strand, within BBR_RS13220at 741.751 kb on - strand, within BBR_RS13220at 741.823 kb on + strand, within BBR_RS13220at 741.848 kb on - strand, within BBR_RS13220at 741.850 kb on - strand, within BBR_RS13220at 741.956 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.965 kb on + strand, within BBR_RS13220at 741.988 kb on - strandat 741.990 kb on - strandat 741.990 kb on - strandat 742.006 kb on - strandat 742.023 kb on - strandat 742.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Pyridoxamine
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738,879 - BBR_RS13205 0.41 -2.5
738,879 - BBR_RS13205 0.41 -4.5
738,937 - BBR_RS13205 0.44 -3.1
739,024 - BBR_RS13205 0.50 -2.5
739,075 + BBR_RS13205 0.53 -2.2
739,083 - BBR_RS13205 0.54 -3.5
739,083 - BBR_RS13205 0.54 -2.9
739,085 + BBR_RS13205 0.54 +2.5
739,093 - BBR_RS13205 0.55 -4.1
739,093 - BBR_RS13205 0.55 -4.2
739,176 - BBR_RS13205 0.60 -2.4
739,212 - BBR_RS13205 0.62 -2.9
739,229 - BBR_RS13205 0.64 -3.1
739,236 + BBR_RS13205 0.64 -4.6
739,236 + BBR_RS13205 0.64 -5.1
739,236 + BBR_RS13205 0.64 -3.1
739,253 + BBR_RS13205 0.65 -2.4
739,254 - BBR_RS13205 0.65 -3.4
739,254 - BBR_RS13205 0.65 -4.4
739,254 - BBR_RS13205 0.65 -4.3
739,302 + BBR_RS13205 0.68 -3.8
739,302 - BBR_RS13205 0.68 -3.7
739,308 + BBR_RS13205 0.69 -2.8
739,315 + BBR_RS13205 0.69 -3.0
739,316 - BBR_RS13205 0.69 -2.2
739,321 - BBR_RS13205 0.70 -1.8
739,325 + BBR_RS13205 0.70 -3.2
739,325 + BBR_RS13205 0.70 -3.0
739,325 + BBR_RS13205 0.70 -3.0
739,330 + BBR_RS13205 0.70 -4.0
739,331 + BBR_RS13205 0.70 -2.6
739,334 - BBR_RS13205 0.70 -0.5
739,375 - BBR_RS13205 0.73 -4.6
739,398 - BBR_RS13205 0.75 -5.6
739,398 - BBR_RS13205 0.75 -3.2
739,401 + BBR_RS13205 0.75 -3.6
739,419 + BBR_RS13205 0.76 -4.3
739,429 + BBR_RS13205 0.77 -3.9
739,429 + BBR_RS13205 0.77 -3.0
739,429 + BBR_RS13205 0.77 -3.8
739,429 + BBR_RS13205 0.77 -4.9
739,433 + BBR_RS13205 0.77 -2.0
739,433 + BBR_RS13205 0.77 -3.5
739,437 - BBR_RS13205 0.77 -2.9
739,437 - BBR_RS13205 0.77 -2.6
739,437 - BBR_RS13205 0.77 -2.0
739,500 - BBR_RS13205 0.81 -2.6
739,523 + BBR_RS13205 0.83 -4.2
739,537 + BBR_RS13205 0.84 -2.3
739,537 + BBR_RS13205 0.84 -2.8
739,545 - BBR_RS13205 0.84 -2.3
739,545 - BBR_RS13205 0.84 -3.8
739,545 - BBR_RS13205 0.84 -2.4
739,545 - BBR_RS13205 0.84 -4.1
739,547 + BBR_RS13205 0.84 -3.1
739,555 - BBR_RS13205 0.85 -3.5
739,567 - BBR_RS13205 0.86 -4.0
739,578 + BBR_RS13205 0.86 -4.4
739,582 + BBR_RS13205 0.87 -4.8
739,586 - BBR_RS13205 0.87 -3.1
739,607 - BBR_RS13205 0.88 -3.3
739,665 - -2.6
739,690 - -4.3
739,754 + -0.8
739,754 + -1.4
739,762 - -5.3
739,762 - +0.1
739,769 + -0.5
739,932 + +1.3
739,969 + -0.1
739,972 + +0.3
739,978 + +0.7
739,978 + -0.8
740,032 + BBR_RS13210 0.14 +1.0
740,102 - BBR_RS13210 0.20 +1.3
740,104 + BBR_RS13210 0.20 -0.6
740,140 + BBR_RS13210 0.23 -0.5
740,143 - BBR_RS13210 0.24 -0.7
740,194 - BBR_RS13210 0.28 -0.1
740,218 + BBR_RS13210 0.30 +1.0
740,225 - BBR_RS13210 0.31 +2.1
740,244 + BBR_RS13210 0.32 -0.9
740,260 + BBR_RS13210 0.34 +1.1
740,268 - BBR_RS13210 0.34 +0.9
740,268 - BBR_RS13210 0.34 -0.2
740,479 + BBR_RS13210 0.52 +1.9
740,549 - BBR_RS13210 0.58 +1.5
740,595 + BBR_RS13210 0.62 +2.9
740,659 + BBR_RS13210 0.67 +0.7
740,672 - BBR_RS13210 0.69 -0.5
740,677 + BBR_RS13210 0.69 +0.6
740,753 - BBR_RS13210 0.75 +0.2
740,770 - BBR_RS13210 0.77 +0.6
740,815 - BBR_RS13210 0.81 +1.2
740,878 - BBR_RS13210 0.86 +0.1
741,000 + -0.3
741,072 - BBR_RS13215 0.12 +0.5
741,111 - BBR_RS13215 0.29 +0.2
741,226 + BBR_RS13215 0.81 -3.2
741,276 + -1.0
741,278 + -1.0
741,278 + -1.8
741,284 - +0.4
741,286 - +0.1
741,478 + -0.3
741,478 + -1.5
741,486 - -0.1
741,486 - -0.3
741,493 - -0.7
741,500 + +0.7
741,500 + -0.3
741,618 + BBR_RS13220 0.13 +0.3
741,742 + BBR_RS13220 0.40 +1.9
741,750 - BBR_RS13220 0.41 -1.2
741,751 - BBR_RS13220 0.42 -2.2
741,823 + BBR_RS13220 0.57 -1.1
741,848 - BBR_RS13220 0.63 -0.7
741,850 - BBR_RS13220 0.63 -1.5
741,956 + BBR_RS13220 0.86 -0.7
741,963 + BBR_RS13220 0.88 +0.5
741,963 + BBR_RS13220 0.88 +0.3
741,963 + BBR_RS13220 0.88 +0.1
741,965 + BBR_RS13220 0.88 +0.0
741,988 - -1.1
741,990 - -1.0
741,990 - -1.3
742,006 - -1.7
742,023 - -2.2
742,041 - +0.8

Or see this region's nucleotide sequence