Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26005

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26000 and AZOBR_RS26005 are separated by 4 nucleotides AZOBR_RS26000: AZOBR_RS26000 - histidine kinase, at 884,057 to 885,886 _RS26000 AZOBR_RS26005: AZOBR_RS26005 - chemotaxis protein X, at 885,891 to 886,532 _RS26005 Position (kb) 885 886 887Strain fitness (log2 ratio) -2 -1 0 1at 884.952 kb on + strand, within AZOBR_RS26000at 884.952 kb on + strandat 884.952 kb on + strand, within AZOBR_RS26000at 884.953 kb on - strand, within AZOBR_RS26000at 885.558 kb on + strand, within AZOBR_RS26000at 885.558 kb on + strand, within AZOBR_RS26000at 885.559 kb on - strand, within AZOBR_RS26000at 885.559 kb on - strand, within AZOBR_RS26000at 886.039 kb on + strand, within AZOBR_RS26005at 886.039 kb on + strand, within AZOBR_RS26005at 886.629 kb on + strandat 886.692 kb on - strandat 886.731 kb on + strandat 886.731 kb on + strandat 886.843 kb on + strandat 887.396 kb on + strandat 887.396 kb on + strandat 887.396 kb on + strandat 887.396 kb on + strandat 887.396 kb on + strandat 887.397 kb on - strandat 887.397 kb on - strandat 887.397 kb on - strandat 887.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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884,952 + AZOBR_RS26000 0.49 -1.3
884,952 + +0.1
884,952 + AZOBR_RS26000 0.49 -1.7
884,953 - AZOBR_RS26000 0.49 -0.9
885,558 + AZOBR_RS26000 0.82 -2.4
885,558 + AZOBR_RS26000 0.82 -1.4
885,559 - AZOBR_RS26000 0.82 -0.4
885,559 - AZOBR_RS26000 0.82 -1.6
886,039 + AZOBR_RS26005 0.23 -1.8
886,039 + AZOBR_RS26005 0.23 -1.4
886,629 + -1.9
886,692 - +0.4
886,731 + +0.1
886,731 + -1.7
886,843 + -0.3
887,396 + -0.8
887,396 + -2.4
887,396 + -0.5
887,396 + -1.5
887,396 + -2.2
887,397 - -1.6
887,397 - -0.4
887,397 - +0.2
887,529 - -0.6

Or see this region's nucleotide sequence