Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04215

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04210 and AZOBR_RS04215 are separated by 146 nucleotidesAZOBR_RS04215 and AZOBR_RS04220 are separated by 468 nucleotides AZOBR_RS04210: AZOBR_RS04210 - FAD dependent oxidoreductase, at 884,690 to 886,258 _RS04210 AZOBR_RS04215: AZOBR_RS04215 - NAD synthetase, at 886,405 to 888,069 _RS04215 AZOBR_RS04220: AZOBR_RS04220 - hypothetical protein, at 888,538 to 889,107 _RS04220 Position (kb) 886 887 888 889Strain fitness (log2 ratio) -2 -1 0 1at 885.682 kb on - strand, within AZOBR_RS04210at 885.847 kb on - strand, within AZOBR_RS04210at 885.847 kb on - strand, within AZOBR_RS04210at 885.847 kb on - strand, within AZOBR_RS04210at 886.093 kb on - strand, within AZOBR_RS04210at 886.364 kb on + strandat 886.763 kb on - strand, within AZOBR_RS04215at 887.011 kb on + strand, within AZOBR_RS04215at 887.012 kb on - strand, within AZOBR_RS04215at 887.212 kb on + strand, within AZOBR_RS04215at 887.242 kb on + strand, within AZOBR_RS04215at 887.242 kb on + strand, within AZOBR_RS04215at 887.243 kb on - strand, within AZOBR_RS04215at 887.243 kb on - strand, within AZOBR_RS04215at 887.243 kb on - strand, within AZOBR_RS04215at 887.243 kb on - strand, within AZOBR_RS04215at 887.243 kb on - strand, within AZOBR_RS04215at 887.642 kb on - strand, within AZOBR_RS04215at 887.663 kb on - strand, within AZOBR_RS04215at 887.684 kb on - strand, within AZOBR_RS04215at 887.684 kb on - strand, within AZOBR_RS04215at 887.698 kb on + strand, within AZOBR_RS04215at 887.842 kb on + strand, within AZOBR_RS04215at 887.968 kb on + strandat 887.968 kb on + strandat 887.969 kb on - strandat 887.969 kb on - strandat 888.118 kb on - strandat 888.187 kb on + strandat 888.187 kb on + strandat 888.277 kb on + strandat 888.278 kb on - strandat 888.292 kb on + strandat 888.293 kb on - strandat 888.386 kb on - strandat 888.447 kb on - strandat 888.448 kb on + strandat 888.449 kb on - strandat 888.786 kb on - strand, within AZOBR_RS04220at 888.891 kb on - strand, within AZOBR_RS04220

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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885,682 - AZOBR_RS04210 0.63 +0.7
885,847 - AZOBR_RS04210 0.74 -1.2
885,847 - AZOBR_RS04210 0.74 +0.2
885,847 - AZOBR_RS04210 0.74 +0.0
886,093 - AZOBR_RS04210 0.89 -0.7
886,364 + -1.8
886,763 - AZOBR_RS04215 0.22 -0.3
887,011 + AZOBR_RS04215 0.36 +0.2
887,012 - AZOBR_RS04215 0.36 +0.1
887,212 + AZOBR_RS04215 0.48 -1.7
887,242 + AZOBR_RS04215 0.50 -0.4
887,242 + AZOBR_RS04215 0.50 -0.1
887,243 - AZOBR_RS04215 0.50 -0.3
887,243 - AZOBR_RS04215 0.50 -0.5
887,243 - AZOBR_RS04215 0.50 -0.4
887,243 - AZOBR_RS04215 0.50 +0.6
887,243 - AZOBR_RS04215 0.50 -0.6
887,642 - AZOBR_RS04215 0.74 -0.4
887,663 - AZOBR_RS04215 0.76 -0.1
887,684 - AZOBR_RS04215 0.77 -0.0
887,684 - AZOBR_RS04215 0.77 -0.4
887,698 + AZOBR_RS04215 0.78 +0.8
887,842 + AZOBR_RS04215 0.86 +0.3
887,968 + +0.1
887,968 + +1.4
887,969 - +0.4
887,969 - +1.1
888,118 - -0.3
888,187 + -0.4
888,187 + -0.2
888,277 + +0.1
888,278 - -0.9
888,292 + -0.6
888,293 - -1.8
888,386 - -0.1
888,447 - +0.8
888,448 + -0.7
888,449 - +0.2
888,786 - AZOBR_RS04220 0.44 -0.2
888,891 - AZOBR_RS04220 0.62 +0.3

Or see this region's nucleotide sequence