Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03790 and AZOBR_RS03795 are separated by 55 nucleotides AZOBR_RS03795 and AZOBR_RS03800 are separated by 212 nucleotides AZOBR_RS03800 and AZOBR_RS03805 are separated by 10 nucleotides AZOBR_RS03805 and AZOBR_RS03810 are separated by 2 nucleotides
AZOBR_RS03790: AZOBR_RS03790 - D-2-hydroxyacid dehydrogenase, at 799,834 to 800,760
_RS03790
AZOBR_RS03795: AZOBR_RS03795 - Pseudouridine synthase, at 800,816 to 801,454
_RS03795
AZOBR_RS03800: AZOBR_RS03800 - microcin ABC transporter ATP-binding protein, at 801,667 to 803,298
_RS03800
AZOBR_RS03805: AZOBR_RS03805 - twitching motility protein PilT, at 803,309 to 803,779
_RS03805
AZOBR_RS03810: AZOBR_RS03810 - prevent-host-death protein, at 803,782 to 804,024
_RS03810
Position (kb) 801
802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.776 kb on - strand at 800.846 kb on + strand at 800.847 kb on - strand at 800.847 kb on - strand at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.030 kb on - strand, within AZOBR_RS03795 at 801.373 kb on + strand, within AZOBR_RS03795 at 801.413 kb on - strand at 801.413 kb on - strand at 801.413 kb on - strand at 801.462 kb on - strand at 801.462 kb on - strand at 801.592 kb on - strand at 801.622 kb on + strand at 801.668 kb on + strand at 801.668 kb on + strand at 801.669 kb on - strand at 801.734 kb on + strand at 801.734 kb on + strand at 801.735 kb on - strand at 801.860 kb on + strand, within AZOBR_RS03800 at 802.538 kb on + strand, within AZOBR_RS03800 at 802.538 kb on + strand, within AZOBR_RS03800 at 802.539 kb on - strand, within AZOBR_RS03800 at 803.112 kb on - strand, within AZOBR_RS03800 at 803.310 kb on + strand at 803.310 kb on + strand at 803.310 kb on + strand at 803.310 kb on + strand at 803.311 kb on - strand at 803.311 kb on - strand at 803.792 kb on + strand at 803.793 kb on - strand at 803.945 kb on + strand, within AZOBR_RS03810 at 803.945 kb on + strand, within AZOBR_RS03810 at 803.945 kb on + strand at 803.945 kb on + strand, within AZOBR_RS03810 at 803.946 kb on - strand, within AZOBR_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 800,776 - -0.5 800,846 + +0.2 800,847 - +0.8 800,847 - -0.6 801,029 + AZOBR_RS03795 0.33 -0.6 801,029 + AZOBR_RS03795 0.33 +0.4 801,029 + AZOBR_RS03795 0.33 +0.0 801,029 + AZOBR_RS03795 0.33 +0.0 801,029 + AZOBR_RS03795 0.33 +0.2 801,029 + AZOBR_RS03795 0.33 -2.4 801,030 - AZOBR_RS03795 0.33 +0.6 801,373 + AZOBR_RS03795 0.87 +0.7 801,413 - -0.5 801,413 - +0.7 801,413 - +0.1 801,462 - +0.8 801,462 - -0.4 801,592 - +0.3 801,622 + -1.2 801,668 + -0.0 801,668 + +0.7 801,669 - -0.1 801,734 + -0.1 801,734 + -0.9 801,735 - -0.2 801,860 + AZOBR_RS03800 0.12 -0.4 802,538 + AZOBR_RS03800 0.53 -1.9 802,538 + AZOBR_RS03800 0.53 -1.3 802,539 - AZOBR_RS03800 0.53 -1.2 803,112 - AZOBR_RS03800 0.89 -1.4 803,310 + -0.6 803,310 + +0.6 803,310 + -0.6 803,310 + -0.2 803,311 - -0.3 803,311 - +0.5 803,792 + -1.1 803,793 - -1.3 803,945 + AZOBR_RS03810 0.67 -0.9 803,945 + AZOBR_RS03810 0.67 -1.1 803,945 + +2.4 803,945 + AZOBR_RS03810 0.67 -1.5 803,946 - AZOBR_RS03810 0.67 -0.2
Or see this region's nucleotide sequence