Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03035

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03030 and AZOBR_RS03035 are separated by 217 nucleotidesAZOBR_RS03035 and AZOBR_RS03040 are separated by 527 nucleotides AZOBR_RS03030: AZOBR_RS03030 - hypothetical protein, at 644,658 to 644,927 _RS03030 AZOBR_RS03035: AZOBR_RS03035 - hypothetical protein, at 645,145 to 646,629 _RS03035 AZOBR_RS03040: AZOBR_RS03040 - hypothetical protein, at 647,157 to 647,375 _RS03040 Position (kb) 645 646 647Strain fitness (log2 ratio) -1 0 1at 644.171 kb on + strandat 644.171 kb on + strandat 644.172 kb on - strandat 644.343 kb on + strandat 645.205 kb on + strandat 645.205 kb on + strandat 645.206 kb on - strandat 645.404 kb on - strand, within AZOBR_RS03035at 646.447 kb on + strand, within AZOBR_RS03035at 646.448 kb on - strand, within AZOBR_RS03035at 646.448 kb on - strand, within AZOBR_RS03035at 647.133 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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644,171 + +0.5
644,171 + -0.3
644,172 - +0.3
644,343 + +0.4
645,205 + -0.4
645,205 + -1.2
645,206 - -0.2
645,404 - AZOBR_RS03035 0.17 -0.2
646,447 + AZOBR_RS03035 0.88 -0.4
646,448 - AZOBR_RS03035 0.88 -0.5
646,448 - AZOBR_RS03035 0.88 -0.9
647,133 + -1.1

Or see this region's nucleotide sequence