Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12910

Experiment: L-Asparagine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_12900 and AO353_12905 overlap by 25 nucleotidesAO353_12905 and AO353_12910 are separated by 419 nucleotidesAO353_12910 and AO353_12915 are separated by 515 nucleotides AO353_12900: AO353_12900 - serine/threonine protein kinase, at 2,855,756 to 2,857,195 _12900 AO353_12905: AO353_12905 - hypothetical protein, at 2,857,171 to 2,857,470 _12905 AO353_12910: AO353_12910 - hypothetical protein, at 2,857,890 to 2,858,261 _12910 AO353_12915: AO353_12915 - carbamoyltransferase, at 2,858,777 to 2,860,534 _12915 Position (kb) 2857 2858 2859Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2857.193 kb on + strandat 2857.194 kb on - strandat 2857.261 kb on - strand, within AO353_12905at 2857.470 kb on + strandat 2857.470 kb on + strandat 2857.470 kb on + strandat 2857.470 kb on + strandat 2857.470 kb on + strandat 2857.470 kb on + strandat 2857.470 kb on + strandat 2857.471 kb on - strandat 2857.811 kb on + strandat 2857.811 kb on + strandat 2857.811 kb on + strandat 2857.811 kb on + strandat 2857.812 kb on - strandat 2857.836 kb on + strandat 2857.836 kb on + strandat 2857.836 kb on + strandat 2857.837 kb on - strandat 2857.837 kb on - strandat 2857.837 kb on - strandat 2857.837 kb on - strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.838 kb on + strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.839 kb on - strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.840 kb on + strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.841 kb on - strandat 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2857.978 kb on - strand, within AO353_12910at 2858.118 kb on - strand, within AO353_12910at 2858.118 kb on - strand, within AO353_12910at 2858.155 kb on + strand, within AO353_12910at 2858.156 kb on - strand, within AO353_12910at 2858.156 kb on - strand, within AO353_12910at 2858.213 kb on - strand, within AO353_12910at 2858.326 kb on + strandat 2858.326 kb on + strandat 2858.326 kb on + strandat 2858.326 kb on + strandat 2858.326 kb on + strandat 2858.326 kb on + strandat 2858.327 kb on - strandat 2858.327 kb on - strandat 2858.366 kb on - strandat 2858.408 kb on + strandat 2858.408 kb on + strandat 2858.409 kb on - strandat 2858.409 kb on - strandat 2858.409 kb on - strandat 2858.416 kb on - strandat 2858.416 kb on - strandat 2858.513 kb on + strandat 2858.513 kb on + strandat 2858.513 kb on + strandat 2858.513 kb on + strandat 2858.514 kb on - strandat 2858.514 kb on - strandat 2858.514 kb on - strandat 2858.514 kb on - strandat 2858.571 kb on + strandat 2858.571 kb on + strandat 2858.571 kb on + strandat 2858.571 kb on + strandat 2858.581 kb on - strandat 2858.582 kb on + strandat 2858.582 kb on + strandat 2858.582 kb on + strandat 2858.582 kb on + strandat 2858.583 kb on - strandat 2858.583 kb on - strandat 2858.583 kb on - strandat 2858.583 kb on - strandat 2858.628 kb on + strandat 2858.628 kb on + strandat 2858.628 kb on + strandat 2858.629 kb on - strandat 2858.675 kb on + strandat 2858.675 kb on + strandat 2858.676 kb on - strandat 2858.680 kb on + strandat 2858.680 kb on + strandat 2858.682 kb on + strandat 2858.682 kb on + strandat 2858.682 kb on + strandat 2858.682 kb on + strandat 2858.695 kb on + strandat 2858.695 kb on + strandat 2858.727 kb on + strandat 2858.727 kb on + strandat 2858.727 kb on + strandat 2858.727 kb on + strandat 2858.760 kb on + strandat 2858.760 kb on + strandat 2858.760 kb on + strandat 2858.760 kb on + strandat 2858.837 kb on + strandat 2858.837 kb on + strandat 2858.915 kb on + strandat 2859.203 kb on + strand, within AO353_12915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
remove
2,857,193 + +0.3
2,857,194 - -0.0
2,857,261 - AO353_12905 0.30 -1.5
2,857,470 + +0.3
2,857,470 + -0.0
2,857,470 + -0.6
2,857,470 + +2.9
2,857,470 + -0.3
2,857,470 + -1.8
2,857,470 + +0.1
2,857,471 - -1.1
2,857,811 + +0.1
2,857,811 + +1.4
2,857,811 + +0.7
2,857,811 + -0.0
2,857,812 - +0.3
2,857,836 + +0.3
2,857,836 + +1.1
2,857,836 + +0.9
2,857,837 - +2.4
2,857,837 - -0.9
2,857,837 - -0.6
2,857,837 - -0.5
2,857,838 + -0.8
2,857,838 + -1.8
2,857,838 + -1.3
2,857,838 + +0.0
2,857,838 + -0.3
2,857,838 + -0.1
2,857,838 + -0.3
2,857,838 + -2.3
2,857,838 + -0.1
2,857,838 + +0.3
2,857,838 + +2.4
2,857,838 + -0.5
2,857,838 + -2.1
2,857,839 - -0.8
2,857,839 - +0.7
2,857,839 - -0.8
2,857,839 - +0.4
2,857,839 - +1.4
2,857,839 - -1.1
2,857,839 - +0.8
2,857,839 - +0.2
2,857,839 - +1.6
2,857,839 - +1.0
2,857,839 - +0.1
2,857,839 - -1.0
2,857,839 - -0.1
2,857,839 - -0.6
2,857,839 - +0.3
2,857,839 - +0.7
2,857,839 - +1.0
2,857,840 + -1.5
2,857,840 + +0.9
2,857,840 + -0.7
2,857,840 + +0.6
2,857,840 + -0.1
2,857,840 + +0.1
2,857,840 + -2.0
2,857,840 + -0.6
2,857,840 + +0.3
2,857,840 + -0.1
2,857,840 + -0.5
2,857,840 + +0.2
2,857,840 + +0.4
2,857,840 + +0.4
2,857,840 + -1.8
2,857,840 + +1.3
2,857,840 + +0.7
2,857,840 + -0.3
2,857,840 + +1.1
2,857,840 + -0.7
2,857,841 - +1.0
2,857,841 - -1.1
2,857,841 - -1.7
2,857,841 - -0.2
2,857,841 - -1.0
2,857,841 - -0.5
2,857,841 - +1.3
2,857,841 - +0.6
2,857,841 - -2.1
2,857,841 - +0.9
2,857,841 - -0.4
2,857,841 - -0.7
2,857,841 - -0.6
2,857,841 - +0.6
2,857,841 - +0.9
2,857,841 - +0.3
2,857,841 - +0.4
2,857,841 - -0.0
2,857,841 - -2.4
2,857,841 - -0.7
2,857,841 - +0.2
2,857,841 - +0.9
2,857,841 - +0.3
2,857,841 - +0.3
2,857,841 - +0.5
2,857,841 - -2.0
2,857,978 - AO353_12910 0.24 +0.4
2,857,978 - AO353_12910 0.24 +1.2
2,857,978 - AO353_12910 0.24 -0.7
2,857,978 - AO353_12910 0.24 -0.8
2,857,978 - AO353_12910 0.24 -1.5
2,857,978 - AO353_12910 0.24 -0.1
2,857,978 - AO353_12910 0.24 +1.2
2,857,978 - AO353_12910 0.24 -0.8
2,857,978 - AO353_12910 0.24 +0.3
2,858,118 - AO353_12910 0.61 -0.1
2,858,118 - AO353_12910 0.61 -0.1
2,858,155 + AO353_12910 0.71 -1.3
2,858,156 - AO353_12910 0.72 +0.3
2,858,156 - AO353_12910 0.72 -1.1
2,858,213 - AO353_12910 0.87 -0.1
2,858,326 + -0.8
2,858,326 + +0.3
2,858,326 + +0.2
2,858,326 + +0.3
2,858,326 + +0.5
2,858,326 + -0.6
2,858,327 - +2.2
2,858,327 - +1.5
2,858,366 - -0.1
2,858,408 + +0.7
2,858,408 + -0.7
2,858,409 - +0.7
2,858,409 - +0.0
2,858,409 - -0.7
2,858,416 - +1.5
2,858,416 - +0.1
2,858,513 + +0.3
2,858,513 + +0.6
2,858,513 + +0.5
2,858,513 + -0.2
2,858,514 - +0.3
2,858,514 - +0.4
2,858,514 - +0.9
2,858,514 - +0.7
2,858,571 + +0.3
2,858,571 + -0.6
2,858,571 + -1.7
2,858,571 + +1.5
2,858,581 - -0.5
2,858,582 + -2.5
2,858,582 + -0.3
2,858,582 + -1.0
2,858,582 + +0.1
2,858,583 - +0.9
2,858,583 - +0.7
2,858,583 - +1.4
2,858,583 - +0.9
2,858,628 + +0.4
2,858,628 + +0.3
2,858,628 + +0.1
2,858,629 - -0.1
2,858,675 + +0.1
2,858,675 + -0.2
2,858,676 - +0.1
2,858,680 + +0.3
2,858,680 + -0.3
2,858,682 + +0.3
2,858,682 + -0.9
2,858,682 + -0.3
2,858,682 + +1.3
2,858,695 + +0.4
2,858,695 + -0.6
2,858,727 + +1.3
2,858,727 + -0.4
2,858,727 + -0.4
2,858,727 + +0.4
2,858,760 + +1.5
2,858,760 + +0.7
2,858,760 + -0.6
2,858,760 + -1.1
2,858,837 + +1.3
2,858,837 + +0.6
2,858,915 + +1.0
2,859,203 + AO353_12915 0.24 -0.6

Or see this region's nucleotide sequence