Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02215 and AO353_02220 are separated by 404 nucleotides AO353_02220 and AO353_02225 are separated by 67 nucleotides AO353_02225 and AO353_02230 are separated by 245 nucleotides AO353_02230 and AO353_02235 are separated by 4 nucleotides
AO353_02215: AO353_02215 - long-chain acyl-CoA synthetase, at 474,773 to 476,611
_02215
AO353_02220: AO353_02220 - hypothetical protein, at 477,016 to 477,294
_02220
AO353_02225: AO353_02225 - LuxR family transcriptional regulator, at 477,362 to 477,595
_02225
AO353_02230: AO353_02230 - haloacid dehalogenase, at 477,841 to 478,524
_02230
AO353_02235: AO353_02235 - acireductone dioxygenase, at 478,529 to 479,074
_02235
Position (kb) 477
478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 476.397 kb on + strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.443 kb on + strand at 476.563 kb on + strand at 476.563 kb on + strand at 476.564 kb on - strand at 476.564 kb on - strand at 476.564 kb on - strand at 476.652 kb on + strand at 476.680 kb on + strand at 476.681 kb on - strand at 476.681 kb on - strand at 476.719 kb on - strand at 476.735 kb on + strand at 476.736 kb on - strand at 476.736 kb on - strand at 476.773 kb on + strand at 476.795 kb on + strand at 476.795 kb on + strand at 476.795 kb on + strand at 476.971 kb on + strand at 477.112 kb on - strand, within AO353_02220 at 477.148 kb on + strand, within AO353_02220 at 477.280 kb on + strand at 477.280 kb on + strand at 477.280 kb on + strand at 477.281 kb on - strand at 477.281 kb on - strand at 477.281 kb on - strand at 477.292 kb on + strand at 477.292 kb on + strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.522 kb on + strand, within AO353_02225 at 477.523 kb on - strand, within AO353_02225 at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand at 477.652 kb on - strand at 477.665 kb on + strand at 477.665 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.681 kb on - strand at 477.681 kb on - strand at 477.681 kb on - strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.705 kb on - strand at 477.705 kb on - strand at 477.735 kb on + strand at 477.735 kb on + strand at 477.735 kb on + strand at 477.736 kb on - strand at 477.754 kb on - strand at 477.754 kb on - strand at 477.754 kb on - strand at 477.762 kb on + strand at 477.763 kb on - strand at 477.787 kb on + strand at 477.787 kb on + strand at 477.787 kb on + strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 476,397 + AO353_02215 0.88 +0.2 476,398 - AO353_02215 0.88 +1.4 476,398 - AO353_02215 0.88 +0.9 476,398 - AO353_02215 0.88 -2.0 476,398 - AO353_02215 0.88 -0.6 476,443 + +0.6 476,563 + +1.4 476,563 + -0.2 476,564 - -0.4 476,564 - -0.9 476,564 - +0.6 476,652 + -0.2 476,680 + -0.9 476,681 - -0.7 476,681 - -0.2 476,719 - -1.6 476,735 + -0.9 476,736 - +1.8 476,736 - -0.7 476,773 + +0.5 476,795 + +0.1 476,795 + +0.4 476,795 + -1.2 476,971 + -0.2 477,112 - AO353_02220 0.34 +1.1 477,148 + AO353_02220 0.47 -1.2 477,280 + +1.4 477,280 + -1.9 477,280 + -1.1 477,281 - +1.1 477,281 - +2.4 477,281 - +0.3 477,292 + -0.2 477,292 + -0.6 477,293 - +0.8 477,293 - -0.6 477,293 - +0.2 477,293 - -0.5 477,293 - +0.4 477,293 - -0.6 477,293 - -2.1 477,293 - +1.8 477,432 + AO353_02225 0.30 -0.1 477,432 + AO353_02225 0.30 +1.4 477,432 + AO353_02225 0.30 -0.0 477,432 + AO353_02225 0.30 +0.2 477,432 + AO353_02225 0.30 +0.1 477,433 - AO353_02225 0.30 -1.1 477,433 - AO353_02225 0.30 -0.4 477,433 - AO353_02225 0.30 +0.4 477,433 - AO353_02225 0.30 +0.1 477,433 - AO353_02225 0.30 +0.3 477,522 + AO353_02225 0.68 -0.7 477,523 - AO353_02225 0.69 -0.6 477,599 + +1.4 477,599 + -0.5 477,599 + -0.9 477,599 + -1.2 477,652 - +0.4 477,665 + -0.2 477,665 + -0.9 477,680 + -0.2 477,680 + -1.6 477,680 + -1.1 477,680 + -0.1 477,680 + -0.6 477,681 - +0.9 477,681 - +1.3 477,681 - +0.3 477,696 + -0.1 477,696 + +1.1 477,696 + -0.6 477,696 + -1.0 477,696 + -0.4 477,697 - +2.2 477,697 - +0.7 477,697 - +0.4 477,697 - +0.5 477,704 + -1.1 477,704 + +0.8 477,704 + +0.8 477,704 + -1.3 477,705 - +1.8 477,705 - -0.4 477,735 + +1.4 477,735 + -0.8 477,735 + +0.1 477,736 - -0.9 477,754 - +1.1 477,754 - +1.4 477,754 - +0.6 477,762 + -0.9 477,763 - +2.1 477,787 + +0.1 477,787 + +1.8 477,787 + +1.2 477,788 - +0.4 477,788 - +0.8 477,788 - +0.6 477,788 - +0.7 477,788 - -0.2 477,788 - +0.5
Or see this region's nucleotide sequence