Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3719 and Shewana3_3720 are separated by 139 nucleotides Shewana3_3720 and Shewana3_3721 are separated by 73 nucleotides Shewana3_3721 and Shewana3_3722 are separated by 356 nucleotides
Shewana3_3719: Shewana3_3719 - hypothetical protein (RefSeq), at 4,461,983 to 4,463,518
_3719
Shewana3_3720: Shewana3_3720 - hypothetical protein (RefSeq), at 4,463,658 to 4,464,698
_3720
Shewana3_3721: Shewana3_3721 - phosphoesterase, PA-phosphatase related (RefSeq), at 4,464,772 to 4,465,284
_3721
Shewana3_3722: Shewana3_3722 - uroporphyrinogen decarboxylase (RefSeq), at 4,465,641 to 4,465,895
_3722
Position (kb)
4463
4464
4465 Strain fitness (log2 ratio)
-2
-1
0
1 at 4462.706 kb on - strand, within Shewana3_3719 at 4462.772 kb on + strand, within Shewana3_3719 at 4462.853 kb on + strand, within Shewana3_3719 at 4462.853 kb on + strand, within Shewana3_3719 at 4462.941 kb on - strand, within Shewana3_3719 at 4462.965 kb on + strand, within Shewana3_3719 at 4463.063 kb on - strand, within Shewana3_3719 at 4463.063 kb on - strand, within Shewana3_3719 at 4463.542 kb on + strand at 4463.550 kb on - strand at 4463.550 kb on - strand at 4463.592 kb on + strand at 4463.676 kb on - strand at 4463.697 kb on - strand at 4463.765 kb on + strand, within Shewana3_3720 at 4463.809 kb on + strand, within Shewana3_3720 at 4463.942 kb on - strand, within Shewana3_3720 at 4463.978 kb on + strand, within Shewana3_3720 at 4464.010 kb on - strand, within Shewana3_3720 at 4464.010 kb on - strand, within Shewana3_3720 at 4464.010 kb on - strand, within Shewana3_3720 at 4464.017 kb on + strand, within Shewana3_3720 at 4464.063 kb on - strand, within Shewana3_3720 at 4464.240 kb on + strand, within Shewana3_3720 at 4464.407 kb on + strand, within Shewana3_3720 at 4464.420 kb on - strand, within Shewana3_3720 at 4464.490 kb on + strand, within Shewana3_3720 at 4464.672 kb on + strand at 4464.672 kb on + strand at 4464.672 kb on + strand at 4464.680 kb on - strand at 4464.715 kb on - strand at 4465.119 kb on + strand, within Shewana3_3721 at 4465.119 kb on + strand, within Shewana3_3721 at 4465.127 kb on - strand, within Shewana3_3721 at 4465.127 kb on - strand, within Shewana3_3721 at 4465.145 kb on - strand, within Shewana3_3721 at 4465.204 kb on + strand, within Shewana3_3721 at 4465.204 kb on + strand, within Shewana3_3721 at 4465.212 kb on - strand, within Shewana3_3721 at 4465.212 kb on - strand, within Shewana3_3721 at 4465.212 kb on - strand, within Shewana3_3721 at 4465.222 kb on - strand, within Shewana3_3721 at 4465.409 kb on - strand at 4465.414 kb on - strand at 4465.457 kb on + strand at 4465.457 kb on + strand at 4465.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,462,706 - Shewana3_3719 0.47 -0.4 4,462,772 + Shewana3_3719 0.51 +1.1 4,462,853 + Shewana3_3719 0.57 +0.5 4,462,853 + Shewana3_3719 0.57 -0.6 4,462,941 - Shewana3_3719 0.62 +0.7 4,462,965 + Shewana3_3719 0.64 +0.6 4,463,063 - Shewana3_3719 0.70 +0.3 4,463,063 - Shewana3_3719 0.70 +0.8 4,463,542 + -1.4 4,463,550 - +0.4 4,463,550 - +0.3 4,463,592 + +0.5 4,463,676 - +0.2 4,463,697 - +0.4 4,463,765 + Shewana3_3720 0.10 -1.8 4,463,809 + Shewana3_3720 0.15 -1.1 4,463,942 - Shewana3_3720 0.27 +0.5 4,463,978 + Shewana3_3720 0.31 +0.5 4,464,010 - Shewana3_3720 0.34 -2.0 4,464,010 - Shewana3_3720 0.34 -1.7 4,464,010 - Shewana3_3720 0.34 -1.7 4,464,017 + Shewana3_3720 0.34 -1.8 4,464,063 - Shewana3_3720 0.39 -2.2 4,464,240 + Shewana3_3720 0.56 +0.5 4,464,407 + Shewana3_3720 0.72 +1.0 4,464,420 - Shewana3_3720 0.73 -1.7 4,464,490 + Shewana3_3720 0.80 -1.5 4,464,672 + -0.5 4,464,672 + +1.0 4,464,672 + +1.1 4,464,680 - +0.4 4,464,715 - -2.6 4,465,119 + Shewana3_3721 0.68 -1.3 4,465,119 + Shewana3_3721 0.68 +0.3 4,465,127 - Shewana3_3721 0.69 -1.4 4,465,127 - Shewana3_3721 0.69 -1.8 4,465,145 - Shewana3_3721 0.73 -1.6 4,465,204 + Shewana3_3721 0.84 +0.5 4,465,204 + Shewana3_3721 0.84 +0.6 4,465,212 - Shewana3_3721 0.86 +1.1 4,465,212 - Shewana3_3721 0.86 +0.4 4,465,212 - Shewana3_3721 0.86 +0.6 4,465,222 - Shewana3_3721 0.88 +1.0 4,465,409 - -0.7 4,465,414 - +0.6 4,465,457 + +0.2 4,465,457 + +0.7 4,465,465 - +0.2
Or see this region's nucleotide sequence