Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3720

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3719 and Shewana3_3720 are separated by 139 nucleotidesShewana3_3720 and Shewana3_3721 are separated by 73 nucleotidesShewana3_3721 and Shewana3_3722 are separated by 356 nucleotides Shewana3_3719: Shewana3_3719 - hypothetical protein (RefSeq), at 4,461,983 to 4,463,518 _3719 Shewana3_3720: Shewana3_3720 - hypothetical protein (RefSeq), at 4,463,658 to 4,464,698 _3720 Shewana3_3721: Shewana3_3721 - phosphoesterase, PA-phosphatase related (RefSeq), at 4,464,772 to 4,465,284 _3721 Shewana3_3722: Shewana3_3722 - uroporphyrinogen decarboxylase (RefSeq), at 4,465,641 to 4,465,895 _3722 Position (kb) 4463 4464 4465Strain fitness (log2 ratio) -2 -1 0 1at 4462.706 kb on - strand, within Shewana3_3719at 4462.772 kb on + strand, within Shewana3_3719at 4462.853 kb on + strand, within Shewana3_3719at 4462.853 kb on + strand, within Shewana3_3719at 4462.941 kb on - strand, within Shewana3_3719at 4462.965 kb on + strand, within Shewana3_3719at 4463.063 kb on - strand, within Shewana3_3719at 4463.063 kb on - strand, within Shewana3_3719at 4463.542 kb on + strandat 4463.550 kb on - strandat 4463.550 kb on - strandat 4463.592 kb on + strandat 4463.676 kb on - strandat 4463.697 kb on - strandat 4463.765 kb on + strand, within Shewana3_3720at 4463.809 kb on + strand, within Shewana3_3720at 4463.942 kb on - strand, within Shewana3_3720at 4463.978 kb on + strand, within Shewana3_3720at 4464.010 kb on - strand, within Shewana3_3720at 4464.010 kb on - strand, within Shewana3_3720at 4464.010 kb on - strand, within Shewana3_3720at 4464.017 kb on + strand, within Shewana3_3720at 4464.063 kb on - strand, within Shewana3_3720at 4464.240 kb on + strand, within Shewana3_3720at 4464.407 kb on + strand, within Shewana3_3720at 4464.420 kb on - strand, within Shewana3_3720at 4464.490 kb on + strand, within Shewana3_3720at 4464.672 kb on + strandat 4464.672 kb on + strandat 4464.672 kb on + strandat 4464.680 kb on - strandat 4464.715 kb on - strandat 4465.119 kb on + strand, within Shewana3_3721at 4465.119 kb on + strand, within Shewana3_3721at 4465.127 kb on - strand, within Shewana3_3721at 4465.127 kb on - strand, within Shewana3_3721at 4465.145 kb on - strand, within Shewana3_3721at 4465.204 kb on + strand, within Shewana3_3721at 4465.204 kb on + strand, within Shewana3_3721at 4465.212 kb on - strand, within Shewana3_3721at 4465.212 kb on - strand, within Shewana3_3721at 4465.212 kb on - strand, within Shewana3_3721at 4465.222 kb on - strand, within Shewana3_3721at 4465.409 kb on - strandat 4465.414 kb on - strandat 4465.457 kb on + strandat 4465.457 kb on + strandat 4465.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,462,706 - Shewana3_3719 0.47 -0.4
4,462,772 + Shewana3_3719 0.51 +1.1
4,462,853 + Shewana3_3719 0.57 +0.5
4,462,853 + Shewana3_3719 0.57 -0.6
4,462,941 - Shewana3_3719 0.62 +0.7
4,462,965 + Shewana3_3719 0.64 +0.6
4,463,063 - Shewana3_3719 0.70 +0.3
4,463,063 - Shewana3_3719 0.70 +0.8
4,463,542 + -1.4
4,463,550 - +0.4
4,463,550 - +0.3
4,463,592 + +0.5
4,463,676 - +0.2
4,463,697 - +0.4
4,463,765 + Shewana3_3720 0.10 -1.8
4,463,809 + Shewana3_3720 0.15 -1.1
4,463,942 - Shewana3_3720 0.27 +0.5
4,463,978 + Shewana3_3720 0.31 +0.5
4,464,010 - Shewana3_3720 0.34 -2.0
4,464,010 - Shewana3_3720 0.34 -1.7
4,464,010 - Shewana3_3720 0.34 -1.7
4,464,017 + Shewana3_3720 0.34 -1.8
4,464,063 - Shewana3_3720 0.39 -2.2
4,464,240 + Shewana3_3720 0.56 +0.5
4,464,407 + Shewana3_3720 0.72 +1.0
4,464,420 - Shewana3_3720 0.73 -1.7
4,464,490 + Shewana3_3720 0.80 -1.5
4,464,672 + -0.5
4,464,672 + +1.0
4,464,672 + +1.1
4,464,680 - +0.4
4,464,715 - -2.6
4,465,119 + Shewana3_3721 0.68 -1.3
4,465,119 + Shewana3_3721 0.68 +0.3
4,465,127 - Shewana3_3721 0.69 -1.4
4,465,127 - Shewana3_3721 0.69 -1.8
4,465,145 - Shewana3_3721 0.73 -1.6
4,465,204 + Shewana3_3721 0.84 +0.5
4,465,204 + Shewana3_3721 0.84 +0.6
4,465,212 - Shewana3_3721 0.86 +1.1
4,465,212 - Shewana3_3721 0.86 +0.4
4,465,212 - Shewana3_3721 0.86 +0.6
4,465,222 - Shewana3_3721 0.88 +1.0
4,465,409 - -0.7
4,465,414 - +0.6
4,465,457 + +0.2
4,465,457 + +0.7
4,465,465 - +0.2

Or see this region's nucleotide sequence