Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2459 and Shewana3_2460 are separated by 406 nucleotides Shewana3_2460 and Shewana3_2461 are separated by 57 nucleotides Shewana3_2461 and Shewana3_2462 are separated by 179 nucleotides
Shewana3_2459: Shewana3_2459 - lytic murein transglycosylase (RefSeq), at 2,948,078 to 2,949,370
_2459
Shewana3_2460: Shewana3_2460 - hypothetical protein (RefSeq), at 2,949,777 to 2,950,136
_2460
Shewana3_2461: Shewana3_2461 - hypothetical protein (RefSeq), at 2,950,194 to 2,950,835
_2461
Shewana3_2462: Shewana3_2462 - response regulator receiver modulated CheW protein (RefSeq), at 2,951,015 to 2,951,959
_2462
Position (kb)
2950
2951 Strain fitness (log2 ratio)
-1
0
1 at 2949.748 kb on + strand at 2949.769 kb on + strand at 2949.780 kb on + strand at 2949.825 kb on - strand, within Shewana3_2460 at 2949.952 kb on + strand, within Shewana3_2460 at 2949.981 kb on - strand, within Shewana3_2460 at 2950.015 kb on + strand, within Shewana3_2460 at 2950.078 kb on + strand, within Shewana3_2460 at 2950.120 kb on + strand at 2950.491 kb on + strand, within Shewana3_2461 at 2950.493 kb on + strand, within Shewana3_2461 at 2950.572 kb on - strand, within Shewana3_2461 at 2950.572 kb on - strand at 2950.974 kb on - strand at 2951.060 kb on - strand at 2951.211 kb on - strand, within Shewana3_2462 at 2951.596 kb on + strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.825 kb on + strand, within Shewana3_2462
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,949,748 + -0.5 2,949,769 + +0.1 2,949,780 + -0.3 2,949,825 - Shewana3_2460 0.13 +0.4 2,949,952 + Shewana3_2460 0.49 -1.0 2,949,981 - Shewana3_2460 0.57 -1.5 2,950,015 + Shewana3_2460 0.66 -0.1 2,950,078 + Shewana3_2460 0.84 -0.0 2,950,120 + +0.5 2,950,491 + Shewana3_2461 0.46 -0.0 2,950,493 + Shewana3_2461 0.47 +0.4 2,950,572 - Shewana3_2461 0.59 -0.3 2,950,572 - -0.9 2,950,974 - +0.4 2,951,060 - +0.6 2,951,211 - Shewana3_2462 0.21 +0.4 2,951,596 + Shewana3_2462 0.61 +0.8 2,951,659 - Shewana3_2462 0.68 +0.3 2,951,659 - Shewana3_2462 0.68 +0.7 2,951,659 - Shewana3_2462 0.68 +0.2 2,951,825 + Shewana3_2462 0.86 +1.0
Or see this region's nucleotide sequence