Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2129 and Shewana3_2130 are separated by 9 nucleotides Shewana3_2130 and Shewana3_2131 are separated by 3 nucleotides
Shewana3_2129: Shewana3_2129 - dihydrolipoamide acetyltransferase (RefSeq), at 2,553,896 to 2,555,491
_2129
Shewana3_2130: Shewana3_2130 - transketolase, central region (RefSeq), at 2,555,501 to 2,556,478
_2130
Shewana3_2131: Shewana3_2131 - dehydrogenase, E1 component (RefSeq), at 2,556,482 to 2,557,660
_2131
Position (kb)
2555
2556
2557 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2554.593 kb on + strand, within Shewana3_2129 at 2554.611 kb on - strand, within Shewana3_2129 at 2554.688 kb on + strand, within Shewana3_2129 at 2554.701 kb on - strand, within Shewana3_2129 at 2554.811 kb on + strand, within Shewana3_2129 at 2554.813 kb on - strand, within Shewana3_2129 at 2554.819 kb on - strand, within Shewana3_2129 at 2555.268 kb on + strand, within Shewana3_2129 at 2555.897 kb on - strand, within Shewana3_2130 at 2556.017 kb on - strand, within Shewana3_2130 at 2556.027 kb on - strand, within Shewana3_2130 at 2556.027 kb on - strand, within Shewana3_2130 at 2556.027 kb on - strand, within Shewana3_2130 at 2556.133 kb on + strand, within Shewana3_2130 at 2556.156 kb on - strand, within Shewana3_2130 at 2556.410 kb on + strand at 2556.918 kb on - strand, within Shewana3_2131 at 2557.072 kb on - strand, within Shewana3_2131 at 2557.134 kb on - strand, within Shewana3_2131 at 2557.157 kb on + strand, within Shewana3_2131 at 2557.317 kb on + strand, within Shewana3_2131 at 2557.325 kb on - strand, within Shewana3_2131
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,554,593 + Shewana3_2129 0.44 -3.2 2,554,611 - Shewana3_2129 0.45 -4.3 2,554,688 + Shewana3_2129 0.50 -4.7 2,554,701 - Shewana3_2129 0.50 -2.7 2,554,811 + Shewana3_2129 0.57 -3.2 2,554,813 - Shewana3_2129 0.57 -3.6 2,554,819 - Shewana3_2129 0.58 -3.5 2,555,268 + Shewana3_2129 0.86 -3.2 2,555,897 - Shewana3_2130 0.40 -3.6 2,556,017 - Shewana3_2130 0.53 -3.7 2,556,027 - Shewana3_2130 0.54 -3.9 2,556,027 - Shewana3_2130 0.54 -3.2 2,556,027 - Shewana3_2130 0.54 -4.1 2,556,133 + Shewana3_2130 0.65 -4.0 2,556,156 - Shewana3_2130 0.67 -2.1 2,556,410 + -2.5 2,556,918 - Shewana3_2131 0.37 -3.4 2,557,072 - Shewana3_2131 0.50 -4.0 2,557,134 - Shewana3_2131 0.55 -2.0 2,557,157 + Shewana3_2131 0.57 -3.4 2,557,317 + Shewana3_2131 0.71 -2.1 2,557,325 - Shewana3_2131 0.72 -2.0
Or see this region's nucleotide sequence