Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1742

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1740 and Shewana3_1741 are separated by 77 nucleotidesShewana3_1741 and Shewana3_1742 are separated by 194 nucleotidesShewana3_1742 and Shewana3_1743 are separated by 279 nucleotidesShewana3_1743 and Shewana3_1744 are separated by 96 nucleotides Shewana3_1740: Shewana3_1740 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,051,257 to 2,055,042 _1740 Shewana3_1741: Shewana3_1741 - hypothetical protein (RefSeq), at 2,055,120 to 2,055,467 _1741 Shewana3_1742: Shewana3_1742 - leucine dehydrogenase (RefSeq), at 2,055,662 to 2,056,696 _1742 Shewana3_1743: Shewana3_1743 - hypothetical protein (RefSeq), at 2,056,976 to 2,057,434 _1743 Shewana3_1744: Shewana3_1744 - cupin 4 family protein (RefSeq), at 2,057,531 to 2,058,670 _1744 Position (kb) 2055 2056 2057Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2055.002 kb on - strandat 2055.007 kb on - strandat 2055.146 kb on + strandat 2055.291 kb on - strand, within Shewana3_1741at 2055.448 kb on - strandat 2055.659 kb on + strandat 2055.948 kb on + strand, within Shewana3_1742at 2055.974 kb on - strand, within Shewana3_1742at 2056.111 kb on + strand, within Shewana3_1742at 2056.144 kb on + strand, within Shewana3_1742at 2056.160 kb on + strand, within Shewana3_1742at 2056.189 kb on + strand, within Shewana3_1742at 2056.197 kb on - strand, within Shewana3_1742at 2056.197 kb on - strand, within Shewana3_1742at 2056.203 kb on + strand, within Shewana3_1742at 2056.707 kb on + strandat 2057.016 kb on + strandat 2057.511 kb on + strandat 2057.528 kb on + strandat 2057.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,055,002 - +0.5
2,055,007 - -0.0
2,055,146 + -1.1
2,055,291 - Shewana3_1741 0.49 -1.6
2,055,448 - -2.7
2,055,659 + -1.0
2,055,948 + Shewana3_1742 0.28 -4.3
2,055,974 - Shewana3_1742 0.30 -2.7
2,056,111 + Shewana3_1742 0.43 -2.2
2,056,144 + Shewana3_1742 0.47 -3.8
2,056,160 + Shewana3_1742 0.48 -2.2
2,056,189 + Shewana3_1742 0.51 -2.6
2,056,197 - Shewana3_1742 0.52 -2.5
2,056,197 - Shewana3_1742 0.52 -3.6
2,056,203 + Shewana3_1742 0.52 -1.6
2,056,707 + -2.7
2,057,016 + +0.1
2,057,511 + -0.3
2,057,528 + -2.4
2,057,536 - +0.3

Or see this region's nucleotide sequence