Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1689

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1687 and Shewana3_1688 are separated by 114 nucleotidesShewana3_1688 and Shewana3_1689 are separated by 1 nucleotidesShewana3_1689 and Shewana3_1690 are separated by 688 nucleotides Shewana3_1687: Shewana3_1687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,982,069 to 1,983,022 _1687 Shewana3_1688: Shewana3_1688 - acyl-CoA thioesterase II (RefSeq), at 1,983,137 to 1,984,003 _1688 Shewana3_1689: Shewana3_1689 - hypothetical protein (RefSeq), at 1,984,005 to 1,984,409 _1689 Shewana3_1690: Shewana3_1690 - protease domain-containing protein (RefSeq), at 1,985,098 to 1,989,000 _1690 Position (kb) 1984 1985Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1983.080 kb on + strandat 1983.100 kb on + strandat 1983.131 kb on + strandat 1983.286 kb on - strand, within Shewana3_1688at 1983.448 kb on + strand, within Shewana3_1688at 1983.670 kb on - strand, within Shewana3_1688at 1983.951 kb on - strandat 1983.982 kb on - strandat 1984.137 kb on + strand, within Shewana3_1689at 1984.145 kb on - strand, within Shewana3_1689at 1984.197 kb on + strand, within Shewana3_1689at 1984.337 kb on + strand, within Shewana3_1689at 1984.382 kb on + strandat 1984.672 kb on - strandat 1985.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,983,080 + -0.3
1,983,100 + +1.1
1,983,131 + -1.9
1,983,286 - Shewana3_1688 0.17 +0.7
1,983,448 + Shewana3_1688 0.36 +0.8
1,983,670 - Shewana3_1688 0.61 +1.3
1,983,951 - +2.9
1,983,982 - +2.6
1,984,137 + Shewana3_1689 0.33 +3.7
1,984,145 - Shewana3_1689 0.35 -0.0
1,984,197 + Shewana3_1689 0.47 +2.8
1,984,337 + Shewana3_1689 0.82 +3.2
1,984,382 + +1.3
1,984,672 - +0.3
1,985,124 + -2.6

Or see this region's nucleotide sequence