Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1294

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1293 and Shewana3_1294 are separated by 259 nucleotidesShewana3_1294 and Shewana3_1295 overlap by 16 nucleotides Shewana3_1293: Shewana3_1293 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,504,135 to 1,506,138 _1293 Shewana3_1294: Shewana3_1294 - hypothetical protein (RefSeq), at 1,506,398 to 1,506,643 _1294 Shewana3_1295: Shewana3_1295 - acriflavin resistance protein (RefSeq), at 1,506,628 to 1,509,708 _1295 Position (kb) 1506 1507Strain fitness (log2 ratio) -3 -2 -1 0 1at 1505.443 kb on + strand, within Shewana3_1293at 1505.492 kb on + strand, within Shewana3_1293at 1505.492 kb on + strand, within Shewana3_1293at 1505.561 kb on - strand, within Shewana3_1293at 1505.651 kb on - strand, within Shewana3_1293at 1506.084 kb on + strandat 1506.148 kb on - strandat 1506.253 kb on + strandat 1506.253 kb on + strandat 1506.253 kb on + strandat 1506.257 kb on + strandat 1506.299 kb on + strandat 1506.311 kb on + strandat 1506.347 kb on + strandat 1506.347 kb on + strandat 1506.359 kb on + strandat 1506.401 kb on - strandat 1506.504 kb on + strand, within Shewana3_1294at 1506.654 kb on - strandat 1506.707 kb on + strandat 1506.759 kb on + strandat 1506.770 kb on + strandat 1506.876 kb on + strandat 1506.954 kb on + strand, within Shewana3_1295at 1507.071 kb on + strand, within Shewana3_1295at 1507.079 kb on - strand, within Shewana3_1295at 1507.129 kb on - strand, within Shewana3_1295at 1507.172 kb on - strand, within Shewana3_1295at 1507.341 kb on + strand, within Shewana3_1295at 1507.342 kb on - strand, within Shewana3_1295at 1507.356 kb on + strand, within Shewana3_1295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
1,505,443 + Shewana3_1293 0.65 +0.0
1,505,492 + Shewana3_1293 0.68 +1.2
1,505,492 + Shewana3_1293 0.68 +0.7
1,505,561 - Shewana3_1293 0.71 -0.5
1,505,651 - Shewana3_1293 0.76 -2.3
1,506,084 + -1.2
1,506,148 - +0.6
1,506,253 + -1.1
1,506,253 + +0.2
1,506,253 + -2.1
1,506,257 + +1.0
1,506,299 + +0.3
1,506,311 + -1.1
1,506,347 + -1.8
1,506,347 + -1.7
1,506,359 + -0.8
1,506,401 - -0.6
1,506,504 + Shewana3_1294 0.43 -1.3
1,506,654 - +0.6
1,506,707 + -3.0
1,506,759 + +0.7
1,506,770 + +0.7
1,506,876 + -1.5
1,506,954 + Shewana3_1295 0.11 -1.3
1,507,071 + Shewana3_1295 0.14 +0.6
1,507,079 - Shewana3_1295 0.15 -3.0
1,507,129 - Shewana3_1295 0.16 -0.8
1,507,172 - Shewana3_1295 0.18 +1.0
1,507,341 + Shewana3_1295 0.23 -0.5
1,507,342 - Shewana3_1295 0.23 +0.5
1,507,356 + Shewana3_1295 0.24 +0.4

Or see this region's nucleotide sequence