Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1037

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1036 and prfC are separated by 99 nucleotidesprfC and Shewana3_1038 are separated by 258 nucleotides Shewana3_1036: Shewana3_1036 - lipoprotein NlpI (RefSeq), at 1,211,356 to 1,212,258 _1036 Shewana3_1037: prfC - peptide chain release factor 3 (RefSeq), at 1,212,358 to 1,213,938 prfC Shewana3_1038: Shewana3_1038 - TatD-related deoxyribonuclease (RefSeq), at 1,214,197 to 1,214,964 _1038 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1211.405 kb on + strandat 1211.931 kb on + strand, within Shewana3_1036at 1212.063 kb on + strand, within Shewana3_1036at 1212.606 kb on - strand, within prfCat 1212.654 kb on - strand, within prfCat 1212.950 kb on + strand, within prfCat 1213.134 kb on + strand, within prfCat 1213.430 kb on - strand, within prfCat 1213.592 kb on + strand, within prfCat 1214.184 kb on + strandat 1214.199 kb on - strandat 1214.523 kb on - strand, within Shewana3_1038at 1214.616 kb on - strand, within Shewana3_1038

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,211,405 + -1.9
1,211,931 + Shewana3_1036 0.64 -0.5
1,212,063 + Shewana3_1036 0.78 -0.5
1,212,606 - prfC Shewana3_1037 0.16 -2.8
1,212,654 - prfC Shewana3_1037 0.19 -1.3
1,212,950 + prfC Shewana3_1037 0.37 -2.0
1,213,134 + prfC Shewana3_1037 0.49 -2.6
1,213,430 - prfC Shewana3_1037 0.68 -1.6
1,213,592 + prfC Shewana3_1037 0.78 -1.5
1,214,184 + -2.1
1,214,199 - +1.9
1,214,523 - Shewana3_1038 0.42 -1.9
1,214,616 - Shewana3_1038 0.55 -2.0

Or see this region's nucleotide sequence